hi i installed a newer version of freesurfer (using download freesurfer-Linux-rh9-v2.2.tar.gz) but when i try and run tkmedit or tksurfer i get the error:
"error while loading shared libraries: libitk3.2.so: cannot open shared object file: No such file or directory" this is my output when i source SetUpFreeSurfer.csh: Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/jaspell/freesurfer FSFAST_HOME /home/jaspell/freesurfer/fsfast SUBJECTS_DIR /home/jaspell/freesurfer/subjects FUNCTIONALS_DIR /home/jaspell/freesurfer/sessions MINC_BIN_DIR /usr/pubsw/packages/mni/current/bin MINC_LIB_DIR /usr/pubsw/packages/mni/current/lib TCLLIBPATH /home/jaspell/freesurfer/lib/tcltktixblt/lib FSL_DIR /usr/local/fsl and these are the contents of /home/jaspell/freesurfer/lib/tcltktixblt/lib: blt2.4/ libBLTlite24.a libtclstub8.4.a libtk8.4.so* tix8.1/ libBLT24.a* libBLTlite.2.4.dylib* libtix8.1.8.3.so libtk.so.0* tixConfig.sh libBLT.2.4.dylib* libBLTlite.a libtix8.1.8.4.so libtkstub8.4.a tk8.4/ libBLT.2.dylib* libtcl8.4.so* libtixsam8.1.8.4.so tcl8.4/ tkConfig.sh libBLT.a* libtcl.so.0* libtix.so.0 tclConfig.sh any idea how to fix it? i don't suppose there's a way of updating an old version of freesurfer without reinstalling the entire (new version) package? thanks! jane In message <[EMAIL PROTECTED]> Doug Greve <[EMAIL PROTECTED]> writes: > > That's a pretty old version. Can you download and install a new version? > > I actually don't know that much about the interpretation of the color > wheel. Maybe Nouchine or Sari can help with this. > > doug > > > On Fri, 2 Dec 2005, Jane Aspell wrote: > > > hi again > > > > i'm still really stuck with my retinotopy analysis as i'm not sure if my > > version of paint-sess $Id: paint-sess,v 1.2 2003/08/06 00:53:50 greve Exp $ > > FAST Version 20031218) has a bug in it (it doesn't make the field sign > > map). i > > originally downloaded freesurfer-20040218-Linux.tar.gz (for RedHat 9). > > > > also, can someone also confrim the colour coding is: red=upper field/fovea, > > blue=horizontal meridian/parafovea, green=lower visual field/periphery? > > > > i can't work out what the overlay threshold settings should be in tksurfer > > to > > correctly display the colours to code the retinotopy, is there some > > rationale > > for choosing them? > > > > thanks a lot for your help! > > > > Jane > > > > > > In message <[EMAIL PROTECTED]> Doug > > Greve <[EMAIL PROTECTED]> writes: > >> > >> What version of freesurfer (and paint-sess) are you using? This was a > >> problem in some versions about 6 mo ago, but I thought I fixed them > >> all. > >> > >> doug > >> > >> > >> > >> On Thu, 24 Nov 2005, Jane Aspell wrote: > >> > >>> hi again > >>> I have been proceeding with the retinotopy analysis using FsFast, > > following the > >>> instructions at: > >>> > > https://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnalysis > >>> and i believe i have successfully overlaid the results on my surfaces and > > now > >>> have two questions: > >>> > >>> i wasn't able to create the fieldsign with 'paint-sess' because it > > couldn't find > >>> tksurfer.new. when i run 'surf-sess' i use the flag -old which forces it > > to use > >>> tksurfer.old but this doesn't work in the former case. how can i make > >>> 'paint-sess' use tksurfer.old and thus create the fieldsign? > >>> > >>> there are no instructions on how to relate the colours seen when viewing > > eccen > >>> and polar to the location of the ring and wedge. is there a map somewhere > > that > >>> can be loaded that tells me what order the colours run from fovea to > > periphery > >>> and from vertical to horizontal meridian etc.? > >>> > >>> thanks again for your help! > >>> > >>> jane > >>> > >>> > >>> > >> > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR Center > >> [EMAIL PROTECTED] > >> Phone Number: 617-724-2358 > >> Fax: 617-726-7422 > >> > > > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > [EMAIL PROTECTED] > Phone Number: 617-724-2358 > Fax: 617-726-7422 > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
