Re: [Freesurfer] freesurfer problem report

It appears nu_estimate_np_and_em crashes only when processing the data when it resides on a mounted drive. And runs to completion when the subjects dir is on the same file system as the virtual machine. That is an mni tool and I can not fully explain that behavior. It might be worth posting a qu

[Freesurfer] (no subject)

Hi, I am pretty new to the Freesurfer. I want to get the idea how the freesurfer differentiate 6 layers. I have already get the pial/ gray matter,gray/matt white matter, thickness map, then how to calculate and form the laminars? Thanks! -- Yun Wang _

Re: [Freesurfer] Timecourses In freesurfer

Hi Jonathan, in the longitudinal tutorial we open a time course (see here: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial ) for freeview: freeview -f OAS2_0001/surf/lh.pial:overlay=OAS2_0001/surf/lh.long.thickness-avg.fwhm15.mgh:overlay_threshold=0,3.5:overlay=OAS2_00

[Freesurfer] LGI recon-all Errors

Hello, After running recon-all -s $subj –localGI, some of my scans finished with errors stating: make_outer_surface('/misc/data14/jen/IRI_Analysis_2/345/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/misc/data14/jen/IRI_Analysis_2/345/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer')