Hi Jonathan,
in the longitudinal tutorial we open a time course (see here:
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial )
for freeview:
freeview -f
OAS2_0001/surf/lh.pial:overlay=OAS2_0001/surf/lh.long.thickness-avg.fwhm15.mgh:overlay_threshold=0,3.5:overlay=OAS2_0001/surf/lh.long.thickness-stack.mgh:annot=OAS2_0001/label/lh.aparc.annot:annot_outline=1
--timecourse --colorscale
tksurfer:
tksurfer OAS2_0001 lh pial -overlay
$SUBJECTS_DIR/OAS2_0001/surf/lh.long.thickness-avg.fwhm15.mgh -timecourse
$SUBJECTS_DIR/OAS2_0001/surf/lh.long.thickness-stack.mgh -aparc
the stack is a multi frame file (each frame is a time point), e.g. a
thickness stack obtained by mri_concat.
Best, Martin
On 06/13/2015 03:27 AM, jonathan oron wrote:
Hi,
In tksurfer I would like to be able to see the timecourse (Percent
Signal Change) for a vertice or cluster of vertices
I try to load a timecourse using file -> open timecourse and I cant
find any file that will load....
Thanks!
Jonathan
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--
Dr. Martin Reuter
Instructor in Neurology
Harvard Medical School
Assistant in Neuroscience
Dept. of Radiology, Massachusetts General Hospital
Dept. of Neurology, Massachusetts General Hospital
Research Affiliate
Computer Science and Artificial Intelligence Lab,
Dept. of Electrical Engineering and Computer Science,
Massachusetts Institute of Technology
A.A.Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, MA 02129
Phone: +1-617-724-5652
Email:
mreu...@nmr.mgh.harvard.edu
reu...@mit.edu
Web : http://reuter.mit.edu
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