What is the screen output of mris_make_surfaces? And what are the intensity
values in the white matter of the brain.mgz?
On May 21, 2012, at 9:43 PM, Leon wrote:
> Hi, FreeSurfer experts
>
> I have some problems reconstructing a wm surface out of a monkey template and
> would appreciate hel
Hi Linda
sorry, I've never tried this so I'm not sure. It will certainly vary across
subjects though
Bruce
On Mon, 21 May 2012, Linda
Douw wrote:
> Hi Bruce,
> Thanks for the suggestion. I've tried mris_make_face_parcellation, but I
> would still prefer the parcellation being based on the ori
Hi Bruce,
Thanks for the suggestion. I've tried mris_make_face_parcellation, but I
would still prefer the parcellation being based on the original.
I'm now trying to use mris_divide_parcellation in multiple steps (to try
and circumvent the constraint of dividing only by the longest diameter),
where
Dear Experts,
I have some related questions:
1) Am I right in thinking that the default settings for recon-all produce
aparc files where the areas are based on white matter and not pia ?
2) Therefore am I right in assuming that when I use aparcstats2table across
my subjects using "--meas area", t
Hello,
I am running longitudinal stream processing on mprage scans of some subjects
who have been scanned multiple times using the same sequence with 32 NOVA
channels on GE scanner.
For most subjects the base run exited without error, however for few error was
reported in the runs.
The error wa
Wonderful - thank you. That seemed to fix the problem.
Kiely
On Fri, May 18, 2012 at 3:25 PM, Priti Srinivasan <
rspr...@nmr.mgh.harvard.edu> wrote:
> Hi Kiely,
>
> In your terminal (after sourcing the freesurfer environment) type the
> following:
>
> gedit $FREESURFER_HOME/bin/trac-preproc (use
Hi Sarina,
Can you check to see what files are there in the dmri.bedpostX directory?
Do you have the merged_*, mean_*, dyads_* files??
Priti
> Hi, tracula users
>
> I run the trac-all bedp process and resulted this error:
>
> 74 slices processed
> 75 slices processed
> 76 slices processed
>
I am running FreeSurfer 5.1 on a Mac Pro intel using Snow Leopard (OS X 10.6).
I am getting the following GLUT error message:
GLUT: Fatal Error in tkmedit.bin: could not open display: :0.0
GLUT: Fatal Error in tksurfer.bin: could not open display: :0.0
when trying to run tkmedit or tksurfer. F
ok, found it. It's very, very low contrast. What flip angle and TE did
you use. I can't visually distinguish gray from white in many regions
such as motor cortex, so I can't imagine that you can get good thickness
estimates over much of the brain. You could still use them for functional
analysi
the name of the file uploaded is sub.rar.
--
At 2012-05-21 21:02:46,"Bruce Fischl" wrote:
>what is the name of the file you uploaded?
>On Mon, 21 May 2012, Meng Li
>wrote:
>
>> Hi professor,
>> The subject has been uploaded. Can you give me some advice to troubleshoot
>> the outputs.
>>
what is the name of the file you uploaded?
On Mon, 21 May 2012, Meng Li
wrote:
Hi professor,
The subject has been uploaded. Can you give me some advice to troubleshoot the
outputs.
Thanks.
Meng Li
--
At 2012-05-20 21:27:28,"Bruce Fischl" wrote:
If you put the gzipped and tarred subj
Hi, tracula users
I run the trac-all bedp process and resulted this error:
74 slices processed
75 slices processed
76 slices processed
Queuing post processing stage
80 slices processed
For some reason the bedpostX process DOES NOT appear
to have successfully completed. Please examine your
r
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