How do you know? It should be in the same space.
Bruce
On Jan 21, 2010, at 5:01 PM, yzha...@artsci.wustl.edu wrote:
> I have run the following command to create a 001.mgz file from raw
> *.dcm
> data:
>
> recon-all -s -i
>
> The output 001.mgz file is not in the same native space as the
>
It should be in the same space. How do you know it is not? Make sure
that you just pass one dicom file to recon-call (I noticed that you
have a wildcard character in there).
doug
yzha...@artsci.wustl.edu wrote:
> I have run the following command to create a 001.mgz file from raw *.dcm
> data
I have run the following command to create a 001.mgz file from raw *.dcm
data:
recon-all -s -i
The output 001.mgz file is not in the same native space as the original
*.dcm data. Could anyone tell me what space the 001.mgz file is in? Does
the above command change the orientation (i.e does it r
Hi, there,
I installed FreeSurfer under my local directory few months ago.
Last week, I copied all the FreeSurfer folder under my local directory (include
.license file) to the /home directory of our group, so
everyone can use it. However, it turns out that they can not use it even they
can s
mri_vol2surf will create a surface overlay (use with --regheader for
identity).
doug
Ritobrato Datta wrote:
> Hello All,
>
> Are there commandline tools to take processed functional data in .nii format
> and overlay it on the inflated or spherical surface and output a .mgh file ?
> I want to sp
Hi Bruce, Doug, and Mert
Thanks a lot
Regards
Jürgen
On [DATE], "Bruce Fischl" <[ADDRESS]> wrote:
> I'll take that to mean "no,I don't have anything I am comfortable
> distributing yet" :)
>
> On Thu, 21 Jan 2010, Douglas N Greve wrote:
>
>> I've been working on this piece-meal. I think it's
Hello All,
Are there commandline tools to take processed functional data in .nii format
and overlay it on the inflated or spherical surface and output a .mgh file ?
I want to specify the registration method as "Calculate identity matrix"
Thanks
Rito
_
Hi Karry,
do you mean how to register a structural to a pre-existing surface recon?
If so, try using bbregister. I'm assuming you've already run recon-all on
your structurals? Also, please avoid using analyze format if you can! It
doesn't keep track of the direction cosines, which causes major
Hello developer,
I want to change a structure MRI (*.img) into two surface files (*_R.w and
*_L.w).
I first use mri_convert to change *.img to *.mgh ; then use mri_vol2surf to
change a *.mgh file to two surface files *_L.w and *_R.w. But here I meet a
problem: I don’t know how to get th
That does not work very well as you end up registering the left hemi to
the right template. What we have to do is to make a single target that
has both left and right so there is no bias.
doug
Jürgen Hänggi wrote:
> Dear FS experts
>
> As far as I know from Doug, there are preliminary tools for
can you send us the actual screen output, including the command?
On Thu, 21
Jan 2010, Buchmann Andreas wrote:
> Dear Freesurfer Experts,
>
> after a new installation of freesurfer, the command "tkmedit" worked,
> but with the command "recon-all -i ... -s ..." we ran into the following
> error:
>
Hi Jürgen,
why would you flip the MR? What problem are you trying to solve?
Bruce
On Thu, 21
Jan 2010, Jürgen Hänggi wrote:
Dear FS experts
As far as I know from Doug, there are preliminary tools for flipping a
surface model (reversing left and right hemisphere)
http://www.mail-archive.com
Dear FS experts
As far as I know from Doug, there are preliminary tools for flipping a
surface model (reversing left and right hemisphere)
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg11896.html
Because these tools are not yet available I would like to know whether you
would rec
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