I have run the following command to create a 001.mgz file from raw *.dcm data:
recon-all -s <subjid> -i <path to *.dcm data> The output 001.mgz file is not in the same native space as the original *.dcm data. Could anyone tell me what space the 001.mgz file is in? Does the above command change the orientation (i.e does it rotate/translate) besides simply converting from .dcm to 001.mgz thanks a lot yuning _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
