It should be in the same space. How do you know it is not? Make sure that you just pass one dicom file to recon-call (I noticed that you have a wildcard character in there).
doug yzha...@artsci.wustl.edu wrote: > I have run the following command to create a 001.mgz file from raw *.dcm > data: > > recon-all -s <subjid> -i <path to *.dcm data> > > The output 001.mgz file is not in the same native space as the original > *.dcm data. Could anyone tell me what space the 001.mgz file is in? Does > the above command change the orientation (i.e does it rotate/translate) > besides simply converting from .dcm to 001.mgz > > thanks a lot > > yuning > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
