Re: [Freesurfer] hardware recommendations?

2005-10-10 Thread Colleen Tuffy
Hi Bruce, Could you please send this info to the list? Thank you, Colleen On Mon, Oct 10, 2005 at 09:07:36AM -0400, Bruce Fischl wrote: > Hi Lukas, > > we've been using CENT OS4, with opterons. We can send you a complete > recent sample configuration if you like. > > Bruce > > On Mon, 10 Oct

Re: [Freesurfer] invalid command name "PNG"

2005-10-10 Thread Nick Schmansky
For this installation of Freesurfer, you would need to edit csurf to change the line '/usr/sw/bin/tixwish4.1.8.3' to point to your own installation of tixwish, which is not distributed with this freesurfer installation. The newer dev installation does include it though, so you may have better luck

Re: [Freesurfer] invalid command name "PNG"

2005-10-10 Thread Xander Meadow
Hi, Since I'm running Panther I downloaded: freesurfer-Darwin-panther-v2.0.tar.gz and tried to set it up. I got it downloaded and I set up the SetUpFreeSurfer.csh file. But at the beginning of the freesurfer/bin/csurf file is the following lines: # force local (next line not seen by tcl) \ exe

Re: [Freesurfer] invalid command name "PNG"

2005-10-10 Thread Nick Schmansky
Xander, Try using freesurfer-Darwin-tiger-dev20051002-full.dmg to upgrade. It should run on panther. Nick On Mon, 2005-10-10 at 09:47 -0500, Xander Meadow wrote: > > > __ > > I can probably upgrade it without a problem. The

[Freesurfer] aseg visualization

2005-10-10 Thread Bruce Fischl
Hi All, if you are generating aseg volumes DON'T overlay them on the T1 volume. It is only for cortical processing, as the intensity normalization that creates it will erode the borders of the thalamus and the pallidum. Overlay the segmentation on the norm (or orig) volume in order to assess i

Re: [Freesurfer] invalid command name "PNG"

2005-10-10 Thread Xander Meadow
I can probably upgrade it without a problem. The machine is running Panther, so would you recommend freesurfer-Darwin-panther-v2.0.tar.gz or freesurfer-Darwin-tiger-dev20051002-full.dmg to try and install? (I'm guessing the first one, but I just want to be sure). Thanks very much. >Xander On

Re: [Freesurfer] hardware recommendations?

2005-10-10 Thread Bruce Fischl
Hi Lukas, we've been using CENT OS4, with opterons. We can send you a complete recent sample configuration if you like. Bruce On Mon, 10 Oct 2005, [EMAIL PROTECTED] wrote: Dear list members! I wonder if anybody could recommend me hardware for a dedicated freesurfer PC. Any suggestion? Al

[Freesurfer] hardware recommendations?

2005-10-10 Thread L . Scheef
Dear list members! I wonder if anybody could recommend me hardware for a dedicated freesurfer PC. Any suggestion? Also, should I stick to Redhat 9 or is it worth to go for the new SUSE/Redhat distributions? Many thanks for your help and best wishes, Lukas _