Package: ftp.debian.org
Severity: normal
X-Debbugs-Cc: mailatgo...@gmail.com, debian-med@lists.debian.org
The binaries in the upstream version segfaults on some tests on mipsel
and hurd-i386 architectures and the upstream is not interested in support
for
these archs.
Please remove the binary packa
Hi All,
I am going to package a software with pdb files in the test suite and
I wonder if the license below can be considered free.
ftp://ftp.wwpdb.org/pub/pdb/advisory.txt
http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/policies_references.html
Thank you,
Alex
Hi,
On 03/14/2016 04:38 PM, Olivier Sallou wrote:
> Hi,
> how can I get a programmatic list of debianmed packages, possibly by
> section (bioinformatics ,...) ?
>
> Thanks
>
> Olivier
>
May be something like that ?
aptitude search "?maintainer(debian-med-packag...@lists.alioth.debian.org)"
Hi All,
I am looking for sponsorship for plip package [0].
The previous version of the package was rejected by ftpmasters due to
unclear license of PDB files.
This time the pdb files are removed with Files-Excluded in d/copyright,
so I hope it will make through.
Thank you,
Alex
[0] http://anonsc
gt;
> On Thu, Mar 24, 2016 at 05:50:27PM +0100, Alex Mestiashvili wrote:
>> Hi All,
>>
>> I am looking for sponsorship for plip package [0].
>> The previous version of the package was rejected by ftpmasters due to
>> unclear license of PDB files.
>> Thi
Hi Steffen,
On 03/28/2016 05:07 PM, "Steffen Möller" wrote:
> Hi Alex,
>
>> On 03/24/2016 06:18 PM, Andreas Tille wrote:
>>> time to follow other members of the team to become a DD? ;-)
>> Well, seeing that you trust in me is really motivating :)
> Well, your packages are typically brainless to sp
Hi All,
I am about to upload the new version of subread package, but not sure
what to do with a new file with unclear copyright.
I've already tried to contact both authors ( Kadosawa and Hopwood ) but
both emails don't exist anymore ..
Taking into account that the code is not too complicated, ca
Hi,
I'm writing you on behalf of the Debian Med team which is a group inside
Debian with the objective to package free software with relevance in
biology and medicine for official Debian. As you might possibly know we
have created packages also from gmap as you can see on our so
called tasks biol
Any help is greatly appreciated,
here it the gcc's complain:
In file included from gff.h:12:0,
from gtf_tracking.h:12,
from bundles.h:22,
from replicates.h:10,
from common.cpp:28:
GHash.hh: In member function 'GHash::GHashEntry*
G
On Tue, Sep 5, 2017 at 8:44 PM, Jeff Epler wrote:
> On Tue, Sep 05, 2017 at 01:55:58PM +0200, Alex Mestiashvili wrote:
> > GHash.hh:91:44: error: type/value mismatch at argument 1 in template
> > parameter list for 'template struct std::hash'
> > while
On 10/02/2017 04:09 PM, Fabian Klötzl wrote:
> Hi all,
>
> indelible has accumulated some changes. It would be great if someone
> could tag + sponsor a new update.
>
> Thanks,
> Fabian
>
> https://anonscm.debian.org/cgit/debian-med/indelible.git/tree/
>
Hi Fabian,
A few notes to the package -
On 10/02/2017 05:52 PM, Fabian Klötzl wrote:
> Hi,
>
> On 02.10.2017 17:03, Alex Mestiashvili wrote:
>> A few notes to the package - lintian complains about non-https VCS
>> fields, a couple of typos and a hardening issue -
>> indelible: hardening-no-bindnow usr/bin/i
Hello,
I've worked a bit on bowtie in git [0] and think that it is ready for
upload. It also presumably closes #864439. One of the issues I run
during package building is that bowtie unit tests fail on example6 and
exmaple9.
Could somebody who uses bowtie please comment on this ? Not sure if this
On 10/20/2017 06:46 PM, Dominique Belhachemi wrote:
> On Thu, Oct 19, 2017 at 12:16 PM, Alex Mestiashvili <
> ames...@rsh2.donotuse.de> wrote:
>
>> Hello,
>>
>> I've worked a bit on bowtie in git [0] and think that it is ready for
>> upload. It also pr
> ...
> # Failed test 'bowtie success'
> # at t/Bowtie.t line 188.
> # '# reads processed: 2000
> # # reads with at least one reported alignment: 2000 (100.00%)
> # # reads that failed to align: 0 (0.00%)
> # Reported 1000 paired-end alignments to 1 output stream(s)
> # '
> #
On 12/07/2017 07:26 PM, Andreas Tille wrote:
> Hi Alex,
>
> On Thu, Dec 07, 2017 at 06:12:05PM +0100, Alex Mestiashvili wrote:
>>
>> That's a trivial one, s/reads processed: 1000/reads processed: 2000/
>> I'll take care.
>
> Cool! Thanks a lot.
>
Hi All,
>> A new version has been released.
>> https://github.com/BenLangmead/bowtie/releases
>>
>> Please also note the license change.
>
> Thanks a lot for both hints. You can feel free to update the packaging
> in Git yourself if you want to. Or Alex? Please throw ENOTIME or
> something lik
tist, Bioinformatics & Computational Biology
>> Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080
>> Phone: 650-225-5672, Fax: 650-225-5389
>> E-mail: t...@gene.com
>>
>>
>>
>> On Mon, Sep 04, 2017 at 04:25:50PM +0200, Alex Mestiashvili wrote:
&
On 04/19/2018 02:44 PM, Steffen Möller wrote:
>
> On 4/19/18 1:43 PM, Andreas Tille wrote:
>> Hi,
>>
>> On Thu, Apr 19, 2018 at 10:19:31AM +, Debian FTP Masters wrote:
>>> binary:fasta3 is NEW.
>>> binary:fasta3-doc is NEW.
>>> binary:fasta3-doc is NEW.
>>> binary:fasta3 is NEW.
>>> source:fas
Hi,
I'm writing you on behalf of the Debian Med team which is a group inside
Debian with the objective to package free software with relevance in
biology and medicine for official Debian. We are about to create a
debian package from fasta3 as you can see on our so called tasks biology
page[1].
Ac
Hi,
I'm writing you on behalf of the Debian Med team which is a group inside
Debian with the objective to package free software with relevance in
biology and medicine for official Debian. We are about to create a
debian package from fasta3 as you can see on our so called tasks biology
page[1].
Ac
this one got bounced, one more is following :)
Alex
Hi Mattia,
> Alexandre Mestiashvili: you prepared the last updates (referring to
> importing the new upstream releases), but it's clear you never did a
> copyright review. Please always check what you imported for updates in
> the copyright or the licensing details.
Let me please elaborate my po
On 04/21/2018 06:48 PM, Mattia Rizzolo wrote:
> On Sat, Apr 21, 2018 at 05:45:34PM +0200, Alex Mestiashvili wrote:
>> Let me please elaborate my point of view. libzstd is team-maintained,
>> and because I didn't see any changes in the copyright/licensing for the
>&g
On 04/22/2018 12:30 AM, Mattia Rizzolo wrote:
> On Sat, Apr 21, 2018 at 10:24:47PM +0200, Alex Mestiashvili wrote:
>> Now I got it, also opened an issue:
>> https://github.com/facebook/zstd/issues/
>
> Thanks for it!
> Feel free to tag me (@mapreri - or just notify m
>> According the discussion on github, the missing symbols shouldn't cause
>> any harm at they are for experimental features not enabled by default.
>> So, is it still a blocker for 1.3.4?
>
> So the next steps should be:
> 1. check that no rdeps are currently using those symbols (because this
>
> I've also elaborated on this in the upstream bug
> https://github.com/facebook/zstd/issues/
Very good. Thanks!
>
>>> 3. I fear a similar fate will also happen to all the other functions
>>>defined similarly, so I wonder if at least some kind of comment
>>>should be added to the .sy
> AFAIK on Debian/amd64 only SSE2 is allowed to be assumed by default.
>
> I tried to compare my build logs with official ones, but there is none:
>
> https://buildd.debian.org/status/package.php?p=gmap
>
> (( Could you please consider source-only uploads? i.e. "dpkg-buildpackage -S"
> )).
I
On 3/14/19 5:14 PM, Michael Crusoe wrote:
> Google's new "Season of Docs" is an experiment to connect technical
> writers with open source projects to improve their documentation. It is
> unpaid, unlike Outreachy or the Google Summer of Code.
>
> However, maybe the Debian-Med process documentation
On 3/16/19 1:20 PM, Andreas Tille wrote:
> On Sat, Mar 16, 2019 at 10:47:40AM +0100, Liubov Chuprikova wrote:
>>
>> Since we moved the script, should I create a patch to modify the help info,
>> specifying `source /etc/profile.d/tab-qiime.sh` for users?
>
> Yes. I came to the conclusion to move i
On 3/16/19 4:04 PM, Andreas Tille wrote:
> On Sat, Mar 16, 2019 at 02:01:57PM +0100, Alex Mestiashvili wrote:
>> why not install the autocompletion scripts both for bash and zsh
>> automatically? In this case there is no need to inform users at all.
>
> Technical speaking y
On 8/20/19 7:16 AM, Andreas Tille wrote:
> Hi Alexandre,
>
> it looks as if the gffread code in cufflinks would be the
> same code base but the code in gffread source seems to be
> more recent. What do you think?
>
> Kind regards
>
> Andreas.
>
> - Forwarded message from Debian te
Thanks Erik!
I'll try to get in touch with upstream and inform them that the code is
actually free.
However, while packaging of swsse2 makes sense, the source code is not
providing drop-in replacement for the code in fasta3. Nevertheless the
upstream of fasta3 can change the license anyway as far
I'm writing you on behalf of the Debian Med project which tries to
assemble free software in life sciences into Debian to support this
field of endeavour as best as possible. (Here you can find a list of the
packaged software[0].) Fasta3 uses files licensed under a non-free
academic-only license:
On 10/14/19 7:26 PM, Michael Crusoe wrote:
> I can't get it to build from source in a cowbuilder "sid" chroot on my
> laptop, which is currently running Ubuntu Bionic with the 5.0.0-20-generic
> #21~18.04.1-Ubuntu kernel.
>
> running bowtie2-build --usage (or anything) results in a segfault
>
> [
On 10/11/19 11:11 AM, Andreas Tille wrote:
> Hi,
>
> I tried to use 2to3 to port tophat to Python3 in Git[1]. Unfortunately
> the autopkgtest fails with:
>
>
> autopkgtest [09:04:13]: test run-unit-test: [---
>
> [2019-10-11 09:04:13] Beginning TopHat run (v2.1.1)
>
On 11/04/2012 05:38 AM, Charles Plessy wrote:
> Le Fri, Nov 02, 2012 at 11:25:54PM -0400, Carlos Borroto a écrit :
>>
>> I uploaded latest upstream version for Bowtie2, which dropped the beta
>> tag. The package seems ready, but I haven't worked in this package
>> before. Alex, could you please tak
On 11/05/2012 04:01 PM, Carlos Borroto wrote:
> On Mon, Nov 5, 2012 at 5:19 AM, Alex Mestiashvili
> wrote:
>
>> I've uploaded 2.0.0-beta7-1 to unstable, but the notice of that has
>> vanished from debian/changelog, I updated the changelog to reflect this
>> chan
On 05/16/2013 09:34 AM, Debian Bug Tracking System wrote:
> Processing commands for cont...@bugs.debian.org:
>
>> reassign 708439 libboost1.49-dev
> Bug #708439 [src:autodock-vina] autodock-vina: FTBFS: xtime.hpp:23:5: error:
> expected identifier before numeric constant
> Bug reassigned from pac
Hi All,
I am looking for a review for my package pycorrfit [0], ITP #730640.
Lintian is clear, but I am pretty sure there are hidden issues :)
Also I am not sure what to do with png images in doc-src/Images directory.
There are svg files as well, but I haven't managed to correctly convert
the s
Hi Andreas,
Also I am not sure what to do with png images in doc-src/Images directory.
There are svg files as well, but I haven't managed to correctly
convert the svg files to png.
It would be great if you would give me ideas or examples.
I'm not sure what upstream is intending with these files
Hi Simon,
Hi!
The manpage mentions documentation it at
/usr/share/doc/pycorrfit/PyCorrFit_doc.pdf.gz
which is not true.
skainz@foo:~$ dpkg -L pycorrfit |grep pdf
/usr/share/pyshared/pycorrfit_doc/PyCorrFit_doc.pdf
/usr/lib/python2.7/dist-packages/pycorrfit_doc/PyCorrFit_doc.pdf
Please fix t
On 12/16/2013 10:33 AM, Andreas Tille wrote:
Hi Alex,
On Mon, Dec 16, 2013 at 09:49:51AM +0100, Alex Mestiashvili wrote:
It seems that my question is misleading, there are number of
pictures in png and svg formats.
the ones with png extensions are used in the documentation.
I wanted to know if
On 12/16/2013 01:34 PM, Andreas Tille wrote:
On Mon, Dec 16, 2013 at 11:59:38AM +0100, Alex Mestiashvili wrote:
Also He is going to release the new version in a couple of weeks.
Do you think we should wait and upload the new version or is it ok
to upload the current one?
If you just prepared
On 12/16/2013 05:16 PM, Andreas Tille wrote:
Hi Alex,
On Mon, Dec 16, 2013 at 04:31:03PM +0100, Alex Mestiashvili wrote:
Yes, please, I need a sponsor for the very first time at least.
Done.
Great!
Should I place the package on mentors? if it saves your time ..
No. I personally totally
btw, how do I update the tasks page?
I was looking for it in debian-med policy and checkout the
debian-med tasks from svn,
but the link in README seem to be broken:
http://blends.alioth.debian.org/blends/ch-sentinel.en.html
Hmmm, from what README, did you got this link.
The README in the roo
happy New Year to All Debian Med folks :)
I wanted to upload the new release of pycorrfit, but it seems that I
don't have permission for that.
Do you know if I will be able to do it after the previous one is
migrated to testing, or do I need to ask the permission in a some
special way?
Ac
16:45 Uhr
*Von:* "Alex Mestiashvili"
*An:* "Debian Med Project List"
*Betreff:* Fwd: pycorrfit_0.8.0-2~beta-2_amd64.changes REJECTED
happy New Year to All Debian Med folks :)
I wanted to upload the new release of pycorrfit, but it seems that I
don't have permission for th
Hi All,
The new version of bowtie2 was released recently and it seems that it
works only on 64 bit platforms.
http://anonscm.debian.org/gitweb/?p=debian-med/bowtie2.git;a=blob;f=Makefile
lines 141-143.
Could anybody please have a look or try to build for i386 the source to
confirm/disprove
On 02/21/2014 02:17 PM, Olivier Sallou wrote:
On 02/21/2014 02:11 PM, Alex Mestiashvili wrote:
Hi All,
The new version of bowtie2 was released recently and it seems that it
works only on 64 bit platforms.
http://anonscm.debian.org/gitweb/?p=debian-med/bowtie2.git;a=blob;f=Makefile
lines 141
X-Debbugs-Cc: a...@biotec.tu-dresden.de
Package: ftp.debian.org
Severity: normal
Dear FTP Masters,
New upstream release of bowtie2 doesn't build on mentioned in the
subject architectures.
In order to force transition from unstable to testing could you please
consider removal of packages in te
Package: ftp.debian.org
Severity: normal
Dear FTP Masters,
New upstream release of bowtie2 doesn't build on mentioned in the
subject architectures.
In order to force transition from unstable to testing could you please
consider removal of packages in testing with non amd64 architectures ?
Also
Hello,
bowtie2 has stuck in unstable because of change in supported architectures.
I've opened #742614, but haven't received any reaction so far.
Is there anything else one can do to force the transition ?
Thank you,
Alex
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Dear mentors,
I would greatly appreciate if somebody would help with the #733352, I've
spent a couple of hours trying to resolve the issue but my cpp skills
are rather poor.
Thank you,
Alex
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On 04/09/2014 10:56 PM, Andreas Tille wrote:
Hi Thorsten,
On Wed, Apr 09, 2014 at 10:18:02PM +0200, Thorsten Alteholz wrote:
May be also pinging "our" ftpmaster assistant? ;-)
Hmm, sorry, but I don't do rm's. They are far too exciting for my
poor heart.
:-)
But you might ask on #debian-ftp
On 04/11/2014 12:29 AM, Diane Trout wrote:
On Thursday, April 10, 2014 15:30:21 Alex Mestiashvili wrote:
Dear mentors,
I would greatly appreciate if somebody would help with the #733352, I've
spent a couple of hours trying to resolve the issue but my cpp skills
are rather poor.
Than
Hi All,
I've prepared update for cufflinks [0], but when I try to push the
changes I get the following message:
fatal: remote error: access denied or repository not exported:
/debian-med/cufflinks.git
Does it matter if remote is
git://anonscm.debian.org/debian-med/cufflinks.git
or
git://g
I'm not sure about this.
Hope this helps
Andreas.
On Fri, Apr 11, 2014 at 06:02:30PM +0200, Alex Mestiashvili wrote:
Hi All,
I've prepared update for cufflinks [0], but when I try to push the
changes I get the following message:
fatal: remote error: access denied or
On 04/11/2014 11:52 PM, Andreas Tille wrote:
Hi Alex,
On Fri, Apr 11, 2014 at 11:45:11AM +0200, Alex Mestiashvili wrote:
Cool, thank you a lot, we are one step further!
Perhaps it makes sense to contact upstream and propose the patch (in
Git) and ask for further help. Would you volunteer to
Hello,
I am looking for review and upload of my package - pyscanfcs, ITP:#751846.
If everything is fine could you please also grant me the upload privilege?
Thank you,
Alex
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Hi Andreas,
On 06/17/2014 06:52 PM, Andreas Tille wrote:
Hi Alex,
On Tue, Jun 17, 2014 at 04:12:25PM +0200, Alex Mestiashvili wrote:
I am looking for review and upload of my package - pyscanfcs, ITP:#751846.
If everything is fine could you please also grant me the upload privilege?
Without
Hi Andreas,
On 06/18/2014 04:01 PM, Andreas Tille wrote:
Hi Alex,
could you please consider fixing this:
$ lintian pyscanfcs_0.2.2-1_amd64.changes
I: pyscanfcs: capitalization-error-in-description python Python
I thought it is because of wxPython, but it was the lower case python
who caused
Hi,
the last version of tophat fails to build on mips, mipsel and hurd-i386.
The build errors look fixable, but still does it really makes sense to
build tophat for this architectures?
As far as I see the minimum requirements for tophat are at least 4Gb of
RAM, so hurd-i386 as well as other i38
On 07/08/2014 12:25 PM, "Steffen Möller" wrote:
Hello Alex,
Gesendet: Dienstag, 08. Juli 2014 um 11:25 Uhr
Von: "Alex Mestiashvili"
An: "Debian Med Project List"
Betreff: tophat FTBFS on mips, mipsel and hurd-i386
Hi,
the last version of tophat fails to build
Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: subread
Version : 1.4.6-p1
Upstream Author : shi at wehi dot edu dot au
* URL : http://subread.sourceforge.net/
* Li
>Dear Maintainer,
>
>Tophat 2.0.13 started to include a convience copy of samtools 0.1.18,
>I believe
>this is technically a violation of Debian policy. Though I'm not sure
>how hard
>it would be properly fix the issue.
>
>Diane Trout
Hi Diane,
Please see this thread for more details:
https
On 05/06/2015 10:05 AM, "Steffen Möller" wrote:
Quite some of us may visit on researchgate.net from time to time, or seqanswers.com, .. or .. put
your favorite community site here ... and mentally follow the one or other question. While I am far
from always knowing the answer, I find it nonethe
Dear Dr Wei Shi,
I work on packaging of subread for Debian/Ubuntu distributions. In order
to ship the doc/SubreadUserGuide.pdf we need the source code for the
documentation.
Would it be possible to ship the source code of the user guide in the
next releases?
Thank you,
Alex Mestiashvili
On 05/07/2015 05:00 PM, Andreas Tille wrote:
> Hi Alex,
>
> On Thu, May 07, 2015 at 03:24:04PM +0200, Alex Mestiashvili wrote:
>> I work on packaging of subread for Debian/Ubuntu distributions. In
>> order to ship the doc/SubreadUserGuide.pdf we need the source code
>
On 05/07/2015 09:22 PM, Andreas Tille wrote:
> Hi Alex,
>
> On Thu, May 07, 2015 at 09:06:11PM +0200, Alex Mestiashvili wrote:
>>> BTW, it would be possible to add the download from some URL and
>>> add it as additional file(s) in debian/ dir.
>> Do you mean t
On 05/16/2015 07:28 AM, Andreas Tille wrote:
Hi Alex,
On Fri, May 15, 2015 at 09:56:39PM +0200, Alex Mestiashvili wrote:
The problem is that the code builds but tests fail in some strange way.
Well, if I understand things correctly the test is part of the package
build process and thus in the
On 06/04/2015 11:35 PM, Simon Richter wrote:
Hi,
On 04.06.2015 17:21, Alexandre Mestiashvili wrote:
* Package name: plip
This might be confusing to old people. PLIP is a protocol for
transporting IP packets over the parallel port.
Simon
Hi Simon,
I agree that the name is a bit
On 06/05/2015 03:04 PM, Geert Stappers wrote:
On Fri, Jun 05, 2015 at 02:08:37PM +0200, Simon Richter wrote:
On 05.06.2015 11:25, Alex Mestiashvili wrote:
This might be confusing to old people. PLIP is a protocol for
transporting IP packets over the parallel port.
I agree that the name is a
Dear Debian Med folks,
I am looking for review and sponsorship for the
package plip - fully automated protein-ligand interaction profiler.
http://anonscm.debian.org/cgit/debian-med/plip.git
Thank you,
Alex
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On 06/19/2015 03:18 PM, Olivier Sallou wrote:
On 06/19/2015 02:54 PM, Alex Mestiashvili wrote:
Dear Debian Med folks,
I am looking for review and sponsorship for the
package plip - fully automated protein-ligand interaction profiler.
http://anonscm.debian.org/cgit/debian-med/plip.git
Hi
On 06/19/2015 04:00 PM, Olivier Sallou wrote:
On 06/19/2015 03:54 PM, Alex Mestiashvili wrote:
On 06/19/2015 03:18 PM, Olivier Sallou wrote:
On 06/19/2015 02:54 PM, Alex Mestiashvili wrote:
Dear Debian Med folks,
I am looking for review and sponsorship for the
package plip - fully automated
Hello,
I am looking for sponsor for plip package:
Fully automated protein-ligand interaction profiler
http://anonscm.debian.org/cgit/debian-med/plip.git
Currently it is available only as python2 version, but probably in the
future a python3 compatible version will be available too.
Thank you
On 09/01/2015 02:10 PM, Andreas Tille wrote:
> On Tue, Sep 01, 2015 at 12:44:53PM +0200, Corentin Desfarges wrote:
>> I get this error :
>> The following packages have unmet dependencies:
>> libvtk5.8v5 : Conflicts: libvtk5.8 but 5.8.0-17.5+b1 is to be
>> installed.
>> Unable to resolv
On 05/07/2015 09:22 PM, Andreas Tille wrote:
> Hi Alex,
>
> On Thu, May 07, 2015 at 09:06:11PM +0200, Alex Mestiashvili wrote:
>>> BTW, it would be possible to add the download from some URL and
>>> add it as additional file(s) in debian/ dir.
>> Do you mean t
On 09/05/2015 03:46 PM, Andreas Tille wrote:
> Hi Alex,
>
> On Sat, Sep 05, 2015 at 01:38:08PM +0200, Alex Mestiashvili wrote:
>>> Yes, that's comparable to compressed JS files: You can provide the
>>> sources in debian/ dir. I think it is not even mandatory to re
Hello ,
I would like to join the Debian Med Blend meeting in Lübeck ,
I am working as system administrator of bioinformatics group of Prof.
Schroeder at TU-Dresden .
http://www.biotec.tu-dresden.de/research/schroeder/
We use mostly GNU/Debian systems and are interested in support of
bioinforma
Hello ,
I almost finished packaging for vienna-rna (with great help of Andreas
Tille ).
linitian gives only 3 warnings :
$lintian vienna-rna_1.8.4-1_amd64.deb
W: vienna-rna: binary-without-manpage usr/bin/ct2b
W: vienna-rna: binary-without-manpage usr/bin/dpzoom
W: vienna-rna: binary-without-ma
On 02/03/2011 06:21 PM, Karsten Hilbert wrote:
$lintian vienna-rna_1.8.4-1_amd64.deb
W: vienna-rna: binary-without-manpage usr/bin/ct2b
W: vienna-rna: binary-without-manpage usr/bin/dpzoom
W: vienna-rna: binary-without-manpage usr/bin/popt
"popt" sounds like an awfully generic name for a b
On 02/10/2011 09:55 PM, Manuel Prinz wrote:
Hi Alex!
On Thu, Feb 03, 2011 at 05:04:34PM +0100, Alex Mestiashvili wrote:
What else should be done to process this package ?
Sorry for replying late! I had a quick look at your package. It's
looks very good given that you just start
On 02/05/2011 12:05 PM, Steffen Möller wrote:
On 02/04/2011 10:55 AM, Andreas Tille wrote:
On Fri, Feb 04, 2011 at 08:59:37AM +0100, Alex Mestiashvili wrote:
"popt" sounds like an awfully generic name for a binary.
apt-file doesn't show that such name is i
I am looking for a sponsor to upload vienna-rna .
Regards ,
Alex
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Please review it .
Looks good for me .
Thank you .
Alex
Package: wnpp
Owner: Alex Mestiashvili
Severity: wishlist
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* Package name: transtermhp
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On 02/21/2011 07:28 PM, Andreas Tille wrote:
Hi Alex,
On Mon, Feb 21, 2011 at 05:14:53PM +0100, Alex Mestiashvili wrote:
Please review it .
Here are my comments:
0. debian/contro: Group maintenance in Debian Med team
1. Please remove / adapt general comments introduced by dh
Hello ,
seq-gen seems to be ready , but I have some doubts about the copyright file
and correct license name ( GPL2 GPL3 , non gpl at all :) )
Could you please have a look on it .
Thank you in advance ,
Alex
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On 03/09/2011 08:36 PM, Andreas Tille wrote:
On Wed, Mar 09, 2011 at 10:40:39AM +0100, Alex Mestiashvili wrote:
seq-gen seems to be ready , but I have some doubts about the copyright file
and correct license name ( GPL2 GPL3 , non gpl at all :) )
Definitely non-GPL. Just have a look
On 05/04/2011 10:50 AM, Charles Plessy wrote:
Le Wed, May 04, 2011 at 08:46:09AM +, Alex Mestiashvili a écrit :
Author: malex-guest
Date: 2011-05-04 08:46:07 + (Wed, 04 May 2011)
New Revision: 6761
Added:
trunk/packages/cufflinks/trunk/debian/
trunk/packages/cufflinks/trunk
On 05/25/2011 04:35 AM, Charles Plessy wrote:
Dear Alex,
As the Perl transition is over, I have updated libbam to serve its headers in
/usr/include/samtools, and libbio-samtools-perl to search for them there.
You can go ahead with a similar change in cufflinks any time you like.
Have a nice da
On 05/26/2011 07:08 AM, Charles Plessy wrote:
Le Wed, May 25, 2011 at 05:08:54PM +0200, Andreas Tille a écrit :
On Wed, May 25, 2011 at 04:33:37PM +0200, Alex Mestiashvili wrote:
Cufflinks in the git repository appears to be lintian clean .
The manual pages were missing , but each
On 05/26/2011 08:19 AM, Charles Plessy wrote:
Le Thu, May 26, 2011 at 08:08:20AM +0200, Alex Mestiashvili a écrit :
Would it be possible just to roll back to latest commit done by you
, and start over from that point with my changes and the new
upstream 1.0.2 ?
Yes, this is something
On 05/27/2011 07:56 AM, Charles Plessy wrote:
Hi Alex,
I found that format-patch can be given a path, so that it only produces patch
for it. Here is how I have prepared a new cufflinks repository:
debcheckout -a git://git.debian.org/debian-med/cufflinks.git --git-track='*'
cd cufflinks/
On 05/29/2011 04:50 PM, Charles Plessy wrote:
Dear Alex,
I reviewed the licenses in the sources of Cufflinks and found that
the files under src/locfit are not free, because their license
forbids to make benchmarks…
http://anonscm.debian.org/gitweb/?p=debian-med/cufflinks.git;a=blob;f=debian/cop
On 05/30/2011 05:43 PM, Alex Mestiashvili wrote:
On 05/29/2011 04:50 PM, Charles Plessy wrote:
Dear Alex,
I reviewed the licenses in the sources of Cufflinks and found that
the files under src/locfit are not free, because their license
forbids to make benchmarks…
http://anonscm.debian.org
On 06/03/2011 11:46 AM, Sebastian Hilbert wrote:
Am Freitag, 3. Juni 2011, 11:30:12 schrieb Alex Mestiashvili:
On 05/30/2011 05:43 PM, Alex Mestiashvili wrote:
On 05/29/2011 04:50 PM, Charles Plessy wrote:
Dear Alex,
I reviewed the licenses in the sources of Cufflinks and
Hello ,
Here is an interesting software ,
http://code.google.com/p/rdkit/
if its not yet in the list could someone add it to the tasks list ?
Also cufflinks is maintained in the git repository but tasks page isn't
updated .
Best regards ,
Alex
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On 12/02/2011 03:32 PM, Andreas Tille wrote:
> Hi George,
>
> I admit I do not completely understand what you are suggesting but it
> feels somehow hackish. I'd strongly advise to talk to Alexander and
> Charles who both rook part in the discussion in the cufflinks ITP
> (#627799) and have commite
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