On 12/02/2011 03:32 PM, Andreas Tille wrote: > Hi George, > > I admit I do not completely understand what you are suggesting but it > feels somehow hackish. I'd strongly advise to talk to Alexander and > Charles who both rook part in the discussion in the cufflinks ITP > (#627799) and have commited to packaging in Debian Med Git. > > Kind regards > > Andreas. > > On Fri, Dec 02, 2011 at 02:00:24AM +0300, George Marselis wrote: > >> *head-to-desk* >> >> so, i was trying to compile the latest version of cufflinks. it would >> simply not budge: kept tripping over not finding bam.h . The culpit is >> ax_bam.m4 : it is trying to find @%:@include <bam/bam.h> (line 105) >> my solution was to ln -s /usr/include/samtools /usr/linclude/bam . >> worked just fine. >> >> i see that in >> http://sourceforge.net/mailarchive/forum.php?thread_name=20110104103405.GB28632%40sanger.ac.uk&forum_name=samtools-devel >> there was a discussion going on from dec 2010 till may 2011, but it >> does not look that anything came out of that. would incorporating the >> softlink into libbam-dev be an acceptable solution till i finally >> finish the autotools book and submit a patch to upsteam? >> >> thank you, >> >> george marselis >> >> >> -- >> To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org >> with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org >> Archive: >> http://lists.debian.org/CAOi7BfFH67ABK6zVWGj=aget0rge3jnbtmqgjn9mansg4d7...@mail.gmail.com >> >> >> > Hello , I've imported a new version to the git repository :
http://anonscm.debian.org/gitweb/?p=debian-med/cufflinks.git the problem is that I can build source only one time , next time dpkg-source realizes that some files in the source are modified by previous build . As far as I understood it runs autoconf and automake in the middle of compiling and that modifies the following files: configure , Makefile.in config.h.in and src/Makefile.in . Does anybody know how to avoid this ? Thank you , Alex -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4ed94e5f.1000...@biotec.tu-dresden.de
