ore including it in Debian? Otherwise, well, do what you
want. But this name is really disgusting.
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o similar questions.
http://www.happypenguin.org/show?Sturmbahnfahrer&showall=1
Definitely, without his input, there is not much more to say...
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st-process the databases and install them where expected.
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sk of a package proliferation in addition to
the inflation of disk space.
Maybe a solution to this would be to rely on dpkg triggers (when
implemented) so that adding new databases would install only requested
things according to the available tools, and adding new tools would
trigger the reformat
ll not attend Debconf, but I wish you all a lot of
fun and ideas.
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27;s also the fact that if you remove experimental it's easy enough
> for people to set up their apt repositories somewhere if they want to
> provide packages outside of unstable.
... but they would lose the autobuilding from buildd.net.
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/wsvn/debian-med/trunk/packages/bioperl/trunk/debian/?rev=0&sc=0
http://qa.debian.org/[EMAIL PROTECTED]
For a little bit more information, please see:
http://lists.debian.org/debian-med/2007/06/msg00013.html
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Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: gbrowse
Version : 1.68
Upstream Author : Lincoln Stein & the GMOD team ([EMAIL PROTECTED])
URL : http://www.gmod.org/wiki/index.php/GBrowse
License : Sa
rea of [EMAIL PROTECTED] is structural
biology, wheras the expertise of cheaters is... well... cheating.
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active, have opted out answering.
In the meantime, hsffig has been orphaned by others, and its removal is
currently discussed.
I would like to know if it is OK that I orphan pscan and open a
discussion about its removal.
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problem, I found two
unmaintained pacages. One has already been orphaned by others, and its
maintainer seems OK with this since he did not react. I am just asking
if it is OK if I orphan pscan for the same reason, expecting that it
will remove a burden for its maintainer.
Hope that explains,
--
swer
from one maintainer, it is my understanding that no agreement is
reached.
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ed by the presence of abandonned packages, so
unless a DD/DM/NM or the QA team want to take care of the packages, I
second their removal. After Uwe's answer, this concerns only hsffig
(#423289).
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ary of this package, and maybe give a warning. If both packages
are installed, it would give an error. This would solve nicely the
problem in the case of packages which are unlikely to be installed
together.
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acks them. I also support the idea to chose a format from which .menu
and .desktop files would be generated. It is definitely not fun to
maintian two similar files in parallel.
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Hi Joey,
It seems that unfortunately we managed to reach a misunderstanding rate
close to 100 % :(
Le Sat, Jul 14, 2007 at 12:44:16PM -0400, Joey Hess a écrit :
> Charles Plessy wrote:
> > Having a .desktop file is a requrement in Ubuntu, so it is not
> > surprising that people su
s enough to keep us very
busy until September, but after this, if Bill is interested, how about
writing a DEP (Debian Enhancement Proposal)?
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: maq
Version : 0.6.7
Upstream Author : Heng Li <[EMAIL PROTECTED]>
URL : http://maq.sourceforge.net/
License : GPL-3
Programming Lang: C
Description
Le Tue, Jul 08, 2008 at 01:03:26PM +0800, Paul Wise a écrit :
> On Tue, Jul 8, 2008 at 12:15 PM, Charles Plessy <[EMAIL PROTECTED]> wrote:
>
> > Description : Mapping and Assembly with Quality
>
> Please add "genetic" to the short description and no need t
Couldn't we rely on
Debtags to indicate the field of the package to our users?
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Le Tue, Jul 08, 2008 at 12:55:01AM -0700, Don Armstrong a écrit :
> On Tue, 08 Jul 2008, Charles Plessy wrote:
> > How about "builds assembly by mapping short reads to reference
> > sequences"? (cut from Upsteam's website) The mapping is definitely
> > not
> Charles Plessy dijo [Tue, Jul 08, 2008 at 07:00:17PM +0900]:
>
> How about "maps short polymorphic reads to reference biological sequences".
Le Tue, Jul 08, 2008 at 08:40:28AM -0500, Gunnar Wolf a écrit :
>
> I think this line is quite nice as a short description - A
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: srf
Version : 0.1
Upstream Author : http://srf.sourceforge.net/groups.html <[EMAIL PROTECTED]>
URL : http://srf.sourceforge.net/
License : Apache
ould be the base for the drafting of a Debian enhancement proposal.
http://wiki.debian.org/Proposals/DebianMenuUsingDesktopEntries
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submitting a paragraph to the release notes
would be appropriate or is there something better to do?
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Le Fri, Jul 11, 2008 at 10:45:39PM -0700, Russ Allbery a écrit :
> Charles Plessy <[EMAIL PROTECTED]> writes:
>
> > As a result, if the daemon is not running, postrm fails and the package
> > can not be removed. See #489366 for example. Now I wonder how to deal
> >
system. I think that the problem is more
that many non-free programs do not have a licence that is compatible
with some widespread ways of distributing Debian, such as pressing it on
a CD and selling it.
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e. Maybe it could be some kind of goal
for Lenny+1?
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ello, MOTU
science :)
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the moment I did one upload to experimental, but I am not convinced
by my own choice. If somebody has wise comments, I will be grateful to
listen them.
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with a sub
ride' file will systematicly set the priority
of -dbg packages to `extra', or both?
How can we document all of this better? Would a bug against the Policy
be appropriate?
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Le Tue, Jul 22, 2008 at 06:31:05PM +0200, Joerg Jaspert a écrit :
> On 11454 March 1977, Charles Plessy wrote:
>
> > Does it mean that not being extra is a bug, that the persons with
> > write access to the `override' file will systematicly set the priority
> > of
fields completely if they are
only useful at the first upload? This will save the time managing them.
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ing deferred installation steps" or similar?
>
> ... but yes, I think this would be a better phrase. It is true that
> `triggers' is packaging detail which might be better rephrased for
> user consumption.
Actually, it was suggested in this thread to simply not output anything
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: embassy-phylip
Version : 3.67
Upstream Author : The EMBOSS developpers and Joe Felsenstein
URL : ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.67.tar.gz
L
ed anaylsis, or are licensed
differently to EMBOSS (i.e. non GPL).
.
EMBOSS - the European Molecular Biology Open Software Suite - is an
analysis package specially developed for the needs of the molecular
biology user community.
.
The EMBASSY PHYLIP programs all have the prefix "f&q
inted out, there is a lot of source duplication between the
PHYLIP and its EMBASSY fork. But building one from the other seems to be
a lot of complication for no benefit, as the EMBASSY PHYLIP programs are
not wrappers..
Have a nice day,
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t find any relevant
public documentation. Is the change related to the "Ultimate Debian
Database" that is being developped during the Google Summer of Code?
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aintained packages, where it is
sometimes difficult to know what motivated the actions of another
developper years before.
Have a nice day,
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L PROTECTED]>
> * URL : http://repo.or.cz/w/topgit.git
Hello Martin,
http://repo.or.cz/w/topgit.git?a=blob;f=README may be more helpful as a
reference URL. It was given by the upstream author on
http://kerneltrap.org/mailarchive/git/2008/8/3/2795494.
Have a nice day,
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ody is more
inspired, feel free to send your contribution to the following bug:
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=476335
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user-driven for these issuses: If users want some categories of
packages, let's work hard to provide to them. If nobody shows up...
let's concentrate on other issues.
Have a nice day,
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Le Thu, Aug 21, 2008 at 12:18:25PM +0200, Michael Tautschnig a écrit :
>
> Why don't you build your own CDD?
Because Debian Integrated Solutions (that were formerly called Custom
Debian Distributions) are not forks, but 100 % internal projects :)
Have a nice day,
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font that has fixed-width kana and kanji, and
variable-width roman.
A few words about why having the same font with as the 'Mona' font may
also be useful.
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e reported upstream first so
that all the distributions have a chance of providing corrected versions
when the details are made public…
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ng to take these three.
Hi all,
those packages seem to interest many persons. Wouldn't it make sense to
have them team-maintained?
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t is not wasted
effort.
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: last-align
Version : 7
Upstream Author : Martin C. Frith and Paul B. Horton <[EMAIL PROTECTED]>
URL : http://last.cbrc.jp/
License : GPL-3+
Program
ing a simpler
workflow: report upstream, wait for the fix, and backport if necessary
or possible.
How about downgrading the severity of the bug reports to a level that
reflects the severity of the problem?
Have a nice day,
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T
trivial to swich back to exim4, so in the end it is not a
problem for me, but the situation looks a bit wrong. I therefore report
it on this list, just in case uncovers an issue that we would like to
fix before releasing.
Have a nice day,
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Le Tue, Oct 21, 2008 at 12:56:43PM -0500, Manoj Srivastava a écrit :
>
> Where do I record the fact that any contribution I have made to the
> web site or the wiki may be licensed under the GPL?
How about http://wiki.debian.org/ManojSrivastava ?
Have a nice day,
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ly differs by
case (do we support file systems à la Macintosh?),
- if they have a better idea in general.
Have a nice day.
(By the way, are you interested in genetics ?)
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t this to the
debian-devel mailing list and try to find a consensus about which program will
have to be renamed. If a consensus cannot be reached, both programs must be
renamed.
http://www.debian.org/doc/debian-policy/ch-files.html#s10.1
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in which he
acknowledged that they unfortunately did not think about possible issues in an
extended namespace when deciding for a name, as their program started as an
internal project first. He proposed 'snplink' for Debian, as it nicely
summarises what the tool does: linking SNPs.
Have a n
.edu/~purcell/plink/download.shtml
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s to put
/usr/lib/debian-med/ in their paths, so that they do not have to micromanage
such issues.
Lastly, Upstream was very responsive; we probably should discuss again with him.
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pointed out in the other answers you received, your
email adress is available on Internet, so no matter our decisions you will get
some unsollicited emails.
Lastly, as a disclaimer I would like to underline that I am not a listmaster of
the Debian project.
Best regards,
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the first spams can correlate with
the publication of the addresses on our lists. I recommend that we should take
this into account and be careful to not increase the inconvenience by quoting
the address that the persons request us to delete…
Have a nice day,
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se.debian.org/lenny/goals.txt
This leaves "Suggests".
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Le Thu, Nov 06, 2008 at 10:34:48PM +0900, Junichi Uekawa a écrit :
> Hi,
>
> This is a short note to tell you all about what kind of events are
> happening in Japan. Please tell me if there is a more suitable list or
> alias to send this to.
Hi Junichi,
how about [EMAIL PROTECTED] Although it do
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: bioperl-run
Version : 1.5.2.100
Upstream Author : Bioperl Team <[EMAIL PROTECTED]>
URL : http://www.bioperl.org/wiki/Run_package
License : Same as Perl
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: libweakref-perl
Version : 0.01
Upstream Author : Tuomas J. Lukka <[EMAIL PROTECTED]>
URL : http://search.cpan.org/dist/WeakRef/
License : Same as Perl
Le Mon, Nov 10, 2008 at 02:30:54PM +0100, Dominique Dumont a écrit :
> Charles Plessy <[EMAIL PROTECTED]> writes:
>
> > This is a dependancy of libace-perl (ITP #468760), which is a dependancy of
> > BioPerl.
> >
> > Is the Debian Perl group interested i
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: libmath-random-perl
Version : 0.71
Upstream Author : John Venier and Barry W. Brown
URL : http://search.cpan.org/dist/Math-Random/
License : same conditions a
)
By the way, I really want to thank Andreas for his courage to manage the
renaming of the CDD concept.
Have a nice day,
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: libnet-amazon-s3-tools-perl
Version : 0.07
Upstream Author : Mark Atwood
URL : http://search.cpan.org/dist/Net-Amazon-S3-Tools/
License : LGPL
Programmin
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Source: libalgorithm-munkres-perl
Section: perl
Homepage: http://search.cpan.org/dist/Algorithm-Munkres/
Package: libalgorithm-munkres-perl
Architecture: all
Depends: ${perl:Depends}, ${misc:Depends}
Descr
focus energy on the packages without which Debian can not consider
releasing.
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ew system is complementary to the
quality review process on [EMAIL PROTECTED], which does not cover all the
new packages produced by Debian, and is not limited to NEW packages.
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with a subject of
FTP team
([EMAIL PROTECTED]), but fail at multiple criterion: not a
programmer, not on IRC, not possible to give 5-10 hours per week. Is there a
workflow in which I could be helpful, for instance by focusing on the license
inventory and inspection?
Have a nice day,
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Debian M
an warnings" become not only useful to Debian but also
to the whole communauty, since when Upstream corrects his code and
documentation, it benefits to all.
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ctions and counter-arguments.
- The delete button of your mail browser.
Rendez-vous after Lenny release on -devel :)
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earlier).
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eliminary package that helped to convince Upstream to GTK
2.0.
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ble way?
Is it really important that the user name is an email address? Do I have to use
something like [EMAIL PROTECTED], or [EMAIL PROTECTED]
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Le Tue, Dec 09, 2008 at 12:33:12AM +0900, Paul Wise a écrit :
> On Mon, Dec 8, 2008 at 11:44 PM, Charles Plessy <[EMAIL PROTECTED]> wrote:
>
> > I am doing some pilot tagging to implement my idea of peer review for the
> > `debian/copyright' file.
>
> Ho
de maintainance.
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Le Tue, Dec 09, 2008 at 12:23:04AM +0100, Joerg Jaspert a écrit :
>
> Want to volunteer and possibly join too, to get some non-german blood in?
Hi all,
I offer my help for the copyright checking.
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)" instead of
"I personnaly disagree with package X being distributed in Debian for reason Y
(that has nothing to do with security)". This is really competing as number one
cut-and-past excuse with "Our priorities are our users and free software".
Have a nice day,
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a good point: if removed in Lenny+1, GTK+1.2 will
still be apt-gettable for around three years, and then hopefully forever from
snapshots.debian.org.
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machine-readable format if you have not
tried yet: http://wiki.debian.org/Proposals/CopyrightFormat
PPS: If there is interest this proposal could be turned into a DEP.
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implementation, but an
automatic safeguard wouldn't hurt. Also, I think that my proposal can be useful
as well in the case of a big update where the diff is really large. The
maintainer could file a RFH and use the current procedure, giving a look to
other's packges in exchange for the help w
commend to think twice whether it would not be better to remove the package
rather than fixing its bugs.
Have a nice day,
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ghttoolkit/trunk/
I was just wondering if some scripts are already using an environment variable
for storing the alioth login name (ALIOTHLOGIN above), so that I can use the
same and reduce environment chaos…
Have a nice day and end-of-year celebrations !
--
Charles Plessy
Debian Med packaging
ed is not citations but the end of this thread!
PS: and if people could also stop cross-posting between debian-vote and
debian-devel, I think that it would be a great progress for the usefulness of
debian-devel.
Have a nice day,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
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ilipus and all
now that the "base" section has been removed (Policy 3.8.0.0), is it still
necessary to override the management of the Section field instead of simply
trusting the maintainers?
Have a nice day,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: libbio-graphics-perl
Version : 1.82
Upstream Author : Lincoln Stein
URL : http://search.cpan.org/dist/Bio-Graphics/
License : Same as Perl
Programming Lang: Perl
Description
al tradition…
Have a nice day,
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Tsurumi, Kanagawa, Japan
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Dear all,
I will package Bio::PrimerDesigner, which is yet another dependancy of Gbrowse,
the generic genome browser. I already injected the prospective package in the
pkg-perl Subversion repository.
Have a nice day,
-- Charles Plessy
dependancy graph becomes unnecessarily complex when running the
test suite is skipped.
- Information is duplicated between Build-Depends: and the binary packages's
Depends: field.
Any thoughts?
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debia
for
the most complex packages, keeping these two lists synchronised is error-prone,
I will think about a 'control.in' system as Adeodato suggested.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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that were copied from the libc (they are not included in the binary
package). Among them, some GPL-v2 with Bison exeptions, and the infamous Sun
RPC file. Apart from this, there is also some 20-year old files with
non-standard statements that are DFSG compliant.
Have a nice day,
--
Charles Plessy
Deb
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Hi all,
this seems neverending :( Bio::Graphics, that I ITPed, updated its
dependancies, and now recommends Bio::SCF, so here is one more ITP. The package
should be straightforward, however it depdends on Stadens package's libread,
the
factorisation of the package list between Depends and Build-Depends, I will
solve this in my packages with a dpkg substvar, such as
$(depends:libfoo-bar-perl} for Foo::Bar. It seems that it is trivial to pass
through dh_gencontrol.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
ht
ore and that will complain against the substvar. But it
should be easy to desensitize it to substvars, which would restore compliance
with our Policy.
Have a nice day
--
Charles Plessy
Tsurumi, Kanagawa, Japan
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wi
But XPM is a text file, which is
convenient since we (unfortunately) use this .diff.gz which requires to
uuencode any binary addition to a package.
Have a nice day,
--
Charles Plessy
http://charles.plessy.org
Wako, Saitama, Japan
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Le Tue, Jul 24, 2007 at 06:01:38PM -0400, Yaroslav Halchenko a écrit :
> Hi,
>
> I am sorry to reincarnate the thread
I think that it is a very good idea indeed. Here is a rough summary of
it: http://wiki.debian.org/DataPackages
Was there any interesting discussion on the subject during Debconf
d what to hide*.
Have a nice day,
--
Charles Plessy
http://charles.plessy.org
Wako, Saitama, Japan
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name: mira
Version : 2.8.2
Upstream Author : Bastien Chevreux
URL : http://chevreux.org/projects_mira.html
License : GPL
Programming Lang: C
Description :
which are applied on
the main sources.
- One drawback of the greedy approach for organising the Files fields
is that the most important copyright - the one of the programs which
gives to the package its raison d'être - will never be at the top of
the list.
Have a nice day,
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