Dear Herman,
My middle-mouse button works with Wincoot. I happened to be using version
0.8.7 (for a different reason). Newer versions probably should also work. I
am using a three button mouse.
Yong
From: CCP4 bulletin board On Behalf Of Schreuder,
Herman /DE
Sent: Monday, March 23, 2020
Hello,
Wincoot stereo display works on Windows 7 but not on Windows 10 (program
crashes as soon as stereo is enabled). It has been a while since Windows 10
became the main Windows platform. Has anyone found a way to get Wincoot stereo
display to work on Windows 10?
Thanks,
Yong
Research Ad
Arne,
Thanks! Now the challenge is to find version 0.8.6.1. It seems newer version
does not work. Please let me know if you know a way to get hold of version
0.8.6.1.
Yong
From: EchelonIV .
Sent: Monday, March 23, 2020 11:46 AM
To: Yong Wang
Cc: CCP4BB@jiscmail.ac.uk
Subject: [EXTERNAL
: Monday, March 23, 2020 11:50 AM
To: Yong Wang
Cc: CCP4BB@JISCMAIL.AC.UK
Subject: [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10
EXTERNAL EMAIL: Use caution before replying, clicking links, and opening
attachments.
Dear Yong,
I tried hard but I couldn't find any way to ma
, 2020 11:46 AM
To: Yong Wang
Cc: CCP4BB@jiscmail.ac.uk
Subject: [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10
EXTERNAL EMAIL: Use caution before replying, clicking links, and opening
attachments.
Hello,
stereo display works completely fine for me on Windows 10 (WinCoot version
Hi Arne,
Are you using Wincoot “hardware stereo” option on your laptop? Are you viewing
the stereo directly on your laptop display or through a 3D external monitor?
Thanks,
Yong
From: EchelonIV .
Sent: Monday, March 23, 2020 2:12 PM
To: Yong Wang
Cc: CCP4BB@jiscmail.ac.uk
Subject
.
Thanks,
Yong
From: EchelonIV .
Sent: Monday, March 23, 2020 2:53 PM
To: Yong Wang
Cc: CCP4BB@jiscmail.ac.uk
Subject: [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10
EXTERNAL EMAIL: Use caution before replying, clicking links, and opening
attachments.
I tried all settings through on
Hi Eric,
Yes. Hardware stereo on Windows 10 is sorely needed considering Windows 10 has
been out for nearly 5 years and Windows 7 has been dropped from support.
Regards,
Yong
From: ENNIFAR Eric (ARN)
Sent: Tuesday, March 24, 2020 4:46 AM
To: EchelonIV . ; Yong Wang
Cc: CCP4BB
Subject
as having empty density. The equivalent assembly of
asu can happen to any crystal form but if you try to keep the equivalent
molecules together, it may appear more easily in P1 due to the arbitrary origin
shift in P1.
[cid:image001.png@01CF1824.9A115470]
Cheers,
Yong
Yong
--
Yong Wang, Ph.D. Research Advisor,
Discovery Chemistry Research
Eli Lilly & Company Phone: 317-655-9145
Lilly Corporate Center DC 0403 Fax: 317-651-6333
Indianapolis,
We have no problem with 3D vision under Windows 7. You don't even need
high-end Quadro graphics cards. Make sure your graphics driver is up-to-date.
The challenge now is to find the 3D ready monitors, especially large sized
(>24").
Yong
-Original Message-
From: CCP4 bulletin board
The discrepancy between using the original mtz and an updated mtz is likely the
result of the Fobs being placed on the Fcalc scale from Refmac output, not
direct reading of Fcalc.
-YW
-Original Message-
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Keller,
Jacob
Pymol should draw the molecular surface (or Connolly surface) by default. If
you want the solvent accessible surface, turn on the option "solvent
accessible" under Setting/Surface.
Yong
-Original Message-
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Edward A.
Yes, "Save Symmetry Coordinates" in COOT is a very easy way. To avoid text
editing, you can first reload the pdb and use the "Copy Fragment ..." under
Extensions/Modeling to get the desired chains. Then use the "Merge Molecules"
under Calculate to assemble.
Yong
-Original Message-
Fr
Sharing a ligand name should only be limited to having the same compound, i.e.
same 2D structure or connectivity. Each deposition should have its own 3D
coordinates. If a different publication gets your ligand 3D coordinates ("2Y59
actually embodies the atomic coordinates from the 2Y2I"), that
.
---
Yong Wang, Ph.D. Research Advisor,
Discovery Chemistry Research
Eli Lilly & Company Phone:
317-655-
AX ERROR: Use SERIAL
--
$$
I am assuming that the error is from using the "MODEL 1" and not due to
something else. Does anyone have any suggestion on this problem?
Thanks,
Yong
Yong Wang, Ph.D.
Senior Research Advisor
Global Structural Biology
Lilly Research Labor
Hi,
The first model number in the pdb file is 1. In the script it is "MODEL 1". I
will try "MODEL 0" in the script to see how it goes.
Thanks,
Yong
From: Boaz Shaanan
Sent: Wednesday, December 8, 2021 7:37 AM
To: Yong Wang
Cc: CCP4BB@JISCMAIL.AC.UK
Subject: [E
ght
be to use ensembler to generate the ensemble!
Best wishes,
Randy Read
> On 9 Dec 2021, at 21:00, Yong Wang
> <3c4fc05cc53b-dmarc-requ...@jiscmail.ac.uk> wrote:
>
> Hi,
>
>
>
> The first model number in the pdb file is 1. In the script it i
Hi Randy,
Thanks for the trouble shoot and update to the documentation. Now the keyword
"MODEL SERIAL" is doing what it intends to do. My problem is fixed.
Regards,
Yong
-Original Message-
From: Randy John Read
Sent: Friday, December 10, 2021 6:22 AM
To: Yong Wang
subsidiaries in
the United States and Puerto Rico, you must be fully COVID-19 vaccinated and
provide proof of vaccination satisfactory to the company (subject to applicable
law).
Regards,
Yong Wang, Ph.D.
Executive Director
Global Structural Biology
Lilly Research Laboratories
Lilly Corporate C
employment with Eli Lilly and Company and its subsidiaries in
the United States and Puerto Rico, you must be fully COVID-19 vaccinated and
provide proof of vaccination satisfactory to the company (subject to applicable
law).
Regards,
Yong Wang, Ph.D.
Executive Director
Global Structural Biolog
Sorry about the mangled link. Here is the correct link:
https://lilly.wd5.myworkdayjobs.com/LLY/job/US-Indianapolis-IN/Advisor---Structural-Biologist_R-30998
From: CCP4 bulletin board On Behalf Of Yong Wang
Sent: Friday, April 29, 2022 1:01 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [EXTERNAL
Xiao,
I had a direct connection from display port to display port that had worked for
several years (Windows 7). Since last year I have been losing the stereo.
Often the control panel won’t show the 120 Hz like what you saw. Sometimes I
was able to forcefully add a 120 Hz resolution (using t
Ian,
Won’t the spatial resolution of the electron density map be determined more or
less by the “resolution” (d-spacing)? While the normal electron density
includes model contribution, what about the resolution of the Patterson map?
For the case of powder diffraction, after the lines are reso
The “name” means atom names, e.g. n for nitrogen (backbone), yes, you would use
“name” (or n. in short) in your command.
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Alex Lee
Sent: Friday, March 17, 2017 2:34 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [EXTERNAL] [ccp4bb] Pymol
Dear all,
Perhaps the issue is that the refinement program should be able to handle the
priority of ligand dictionary, i.e. your custom ligand ID and dictionary
overrides any existing in the default collection. I have not had any trouble
with LIG or SX1, both existing in PDB ligands. I also n
We also recently found out that mtz files are no longer available for download
from RCSB and structure factor cif files may or may not contain map
coefficients, depending on the entry.
For this particular entry, 8hbk, the map coefficients are actually contained in
the 8hbk-sf.cif file. You may
Quadbuffered stereo still works on Windows 10 (and Linux) with one monitor as
before. The drop of 3Dvision didn’t impact this. What it impacted is the lack
of hardware as manufacturers are no longer making 3D capable monitors, 3D
glasses and emitters.
Best,
Yong
From: CCP4 bulletin board O
P3x 2 1 and P3x 1 2 are different. It is worth testing both in data reduction
and MR.
Yong
From: CCP4 bulletin board On Behalf Of 陈成
Sent: Friday, July 11, 2025 11:59 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [EXTERNAL] Re: [ccp4bb] smaller cell volume for accommodating protein
complex & no MR so
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