guessed it, we got bitten once by a software RAID with
multiple disk failures, and we only noticed it when an application
complained that it couldn't write to a file ;-)
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd.,
ry-led
drive to standardise on colour choices for birth announcement stationery
in the USA. Make of that what you will
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton Ho
g so where there are no major technical impediments is unanswerable.
Regards,
Peter.
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Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
Unit
please reply to me personally, and I will summarise to
the list if appropriate.
Regards,
Peter Keller.
To unsubscribe from the CCP4BB list, click the following link:
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On 21/09/2020 11:03, Schreuder, Herman /DE wrote:
In theory, one gets one’s own message as well.
That depends on your subscription settings to the list. There are three
possible settings for this:
* No acknowledgements
* Short message confirming receipt
* Receive copy of own postings
One
Dear Johannes,
On 07/12/2020 13:21, Tim Gruene wrote:
Dear Johannes,
w.r.t. shelx-binaries:
you can check with
#> cat /proc/cmdline
whether the linux-kernel option include 'vsyscall=emulate'.
Quite some time ago, the linux kernel made vsyscall obsolete. The
SHELX-binaries are probably compile
e of them:
How Apple's Lion won't let you trash documents
The operating system for the nanny state?
http://www.reghardware.com/2011/09/07/apple_mac_os_x_lion_the_nanny_os/
One of the reasons why I'm sticking with Snow Lepoard for now....
Regards,
g system that CCP4
targetted in the pre-Unix days) had it in the 1980's and I don't recall
anyone moaning about it at the time. As you say, it could be a lifesaver
if you overwrote something by mistake. VMS allowed you to purge old
versions completely though, whereas Lion doesn&#x
f view, it doesn't matter if a high-quality structure
of the same protein has since been refined and deposited - the original
images can still be useful.
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd.,
be better spent buying a wine cellar, storage works for wine.
Images have already been lost that ought to have been kept. The
questions are: how to select the datasets that are potentially of value,
and how to make sure that they don't disappear.
Regards,
Peter.
--
Peter Keller
. When MIAME
was being formulated, it drew in part, and learned from, the history of the
PDB.
It is also a field where (I am told) the raw data really are useless without
metadata about the experiment.
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
fixed.
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
uot;b" as is: it is ASX (the standard ambiguity
code for ASP or ASN). "j", "o" and "u" are a different matter :-)
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
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ition rather than leaving it up to the PDB
to look for it.
Good luck, and kudos for thinking about this before depositing!
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton Ho
rds,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
I know that balancing questions of scientific correctness with
the needs of more or less naive consumers of the data isn't
straightforward :-)
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)
acts to about 4 A. in some direction the spots overlap. we
> > can't use the data to index .we think it is because that there is a
> > long unit cell axes. so is there any method to solve this problem?
> >
> > best wishes.
> >
> > 2011-
I don't actually crash our OS X build system, but the
mmap test does fail. I don't have a lot of time to spend on this now,
but if anyone from CCP4 is interested in looking into this, please
contact me off-list.
Regards,
Peter.
--
Peter Keller Tel.:
component list), in addition to the element name
and heuristics. Ideally the alignment information should be included in
refinement dictionaries too, but I don't know how likely that is to happen.
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
G
be good to use different shapes for
positive/negative icons if possible. Maybe for the experimental technique, a
thick underlining or an outline font could be used to distinguish between
data present or absent.
Apart from this PDBprints is excellent IMO. I find it very useful when
scannin
On Tue, 20 Mar 2007, Robert Sweet wrote:
I'm pretty sure that the crystallographer was David Sayre.
Indeed it was. He is mentioned explicitly in this article:
http://inventors.about.com/od/bstartinventors/a/John_Backus_4.htm
Regards,
Peter.
On Thu, 16 Aug 2007, Kay Diederichs wrote:
Date: Thu, 16 Aug 2007 17:16:54 +0200
From: Kay Diederichs <[EMAIL PROTECTED]>
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] The importance of USING our validation tools
I'm glad that the discussion has finally set in, and would only like to
comment
Hi all,
On Wed, 16 Jan 2008, Ian Tickle wrote:
I'm rather surprised that is the complete explanation, for the simple
reason that Perl (or any program for that matter) already inherits all
the environment variables from the shell in which it is run, including
PATH, CINCL, CLIBD_MON etc which wou
Hi,
On Thu, 8 May 2008, James Stroud wrote:
On May 7, 2008, at 3:07 PM, Chris Waddling wrote:
so even temporarily putting a library where it doesn't belong
Actually, this is what /usr/lib is for (except for the "doesn't" part).
According to the Filesystem Hierarchy Standard 4.7 regarding
f a last resort to protect your system of course,
and not a substitute for getting Acorn to run properly.
Good luck,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
D/ATI drivers.
The same is true for SUSE distros: you don't have to recompile the NVIDIA
drivers (or the ATI ones, AFAIK) on a kernel upgrade as long as you have
enabled the correct package repository for the driver.
Regards,
Peter.
--
Peter Keller Tel.: +
author directly at
christian.ma...@cea.fr
You could also try Christian Biertuempfel's suggestion of pDRAW32: if it
works under Wine on Linux, it should work under Wine (or the commercial
equivalent Codeweavers Crossover) on OS X as well.
Regards,
Peter.
--
Peter K
dylib (compatibility version 1.0.0, current
version 111.1.3)
then I think that is probably as static as you should go on Os X.
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
n in open-mindedness, I think.
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
hat credit.
The article, which contains links to a tar file containing the code, and the
documentation, is here:
<http://www.globalphasing.com/startools/>
Hoping that others will find this useful and/or help to resolve or clarify
outstanding questions,
Peter.
merged and unmerged data?
confused (easily)
Phil
On 17 Sep 2013, at 15:30, Peter Keller wrote:
Dear all,
At Global Phasing, we have seen that there are still issues with the way that
different applications deal with mmCIF-format data, and this continues to cause
problems for users. I beli
Hi Marcin,
On Wed, 2013-09-18 at 18:33 +0100, Marcin Wojdyr wrote:
> On Wed, Sep 18, 2013 at 03:41:34PM +0100, Peter Keller wrote:
>
> > I hope that this isn't quite what you meant There are already
> > mutually-incompatible CIF dialects out there that have been cr
y to write a valid CIF,
> > reading CIFs reliably
> > can be a very challenging programming task, because you need to write code
> > that will handle
> > the very complex general case, rather than just specific examples.
> > Fortunately there are
> > software
Hi Marcin,
On Thu, 2013-09-19 at 14:51 +0100, Marcin Wojdyr wrote:
> Hi Peter,
>
> On Thu, Sep 19, 2013 at 10:28:22AM +0100, Peter Keller wrote:
>
> > > http://www.iucr.org/resources/cif/spec/version1.1/cifsyntax#bnf
> ...
> >
> > This grammar seems to be
On Thu, 2013-09-19 at 18:00 +0100, Marcin Wojdyr wrote:
> On Thu, Sep 19, 2013 at 04:38:12PM +0100, Peter Keller wrote:
>
> > >
> > > If there are discrepancies between IUCR website and IT vol.G and it would
> > > be worth to list them.
> >
> >
On Fri, 2013-09-20 at 17:30 +0100, Marcin Wojdyr wrote:
> On Fri, Sep 20, 2013 at 11:51:57AM +0100, Peter Keller wrote:
>
> > The STAR grammar in chapter 2.1 is the accurate one. If you look at page
> > 18, you will see that the productions for quoted text strings are
> &
openSUSE then SLES/SLED should also be OK but now it seems not :-) I'm
afraid that I am unlikely to have time to do this before January though,
so it won't help you if you are in a hurry.
Unless someone else who is running CCP4 under SLES has a quick fix, I
think that building CCP4 from
this spec.
>
> Please send your comments to this list, or, if you prefer, to me personally
> at yaya...@gmail.com
>
> My apologies to the community for not having resolved this sooner, but
> we only became aware today that some people had be
se of you who are not users of Global Phasing software or
services. If there are any questions arising from this, please send them to
us at Global Phasing directly rather than to the CCP4BB list.
Peter Keller
--
Peter Keller Tel.: +44 (0)
e him, not me ;-)
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
##
CCP4BB&A=1
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--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sher
p4wiki or google-fu did not help
Many thanks
Veronica
To unsubscribe from the CCP4BB list, click the following link:
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--
Peter Keller
###
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To unsubscribe from the CCP4BB list, click the following link:
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documentmarking/index.htm.
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Global Phasing Ltd.,
ere
are no geographical restrictions, and it can be accessed from anywhere.
One of the panellists was Prof. Judith Howard, whom some of you know.
Regards,
Peter.
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Global Phasing Ltd., Fax.: +44 (0)1223 366889
She
from the CCP4BB list, click the following link:
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Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Pa
HI Tim,
On Mon, 7 Oct 2019, Tim Gruene wrote:
Date: Mon, 07 Oct 2019 23:04:28 +0200
From: Tim Gruene
To: Peter Keller
Cc: CCP4BB@jiscmail.ac.uk
Subject: Re: [ccp4bb] Shelx and debian 10
@Peter: are you sure that without 'vsyscall=emulate' linux binaries need to be
dynamically
Dear George
On 08/10/2019 11:21, George Sheldrick wrote:
As explained in the attached email from Peter Keller, I was
deliberately preparing the binary Linux SHELX distribution using older
(2011) system libraries so that the programs would run on older
systems that many users are still using
on in particular, except to say that it should work for major
distributions in their default configuration.
Regards,
Peter.
Best wishes,
Isabel
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton
d date seems about right. RHEL 5 was
using kernel 2.6.18, so probably already had vDSO support.
Regards,
Peter.
Best,
Tim
On Tuesday, October 8, 2019 3:53:02 PM CEST Peter Keller wrote:
Dear George
On 08/10/2019 11:21, George Sheldrick wrote:
As explained in the attached email from Pete
e Sheldrick
wrote:
As explained in the attached email from Peter Keller, I was deliberately
preparing the binary Linux SHELX distribution using older (2011) system
libraries so that the programs would run on older systems that many
users are still using. Unfortunately this means that they do not r
statically
link that. Binaries that I produce on this machine don't run on old distros
which have a lower glibc version, e.g. 2.12 in case of CentOS-6.
I use a CentOS-6 virtual machine to produce binaries for others, Wolfgang Kabsch a SuSe
distro of similar "age".
Best,
Kay
some use,
Peter.
>
> Cheers, Leo
>
> -
> Leonard Chavas
> -
> Mailing address:
> Center for Free-Electron Laser Science (CFEL)
> Deutsches Elektronen-SYnchrotron (DESY)
> Notkestrasse 85. Bldg 99
> 22607 Hamburg, Germany
> Room 03.051
>
t; ___
>
> The information
> contained in this email
> is confidential. It is
> intended solely for the
> addressee. Access to
> this email by anyone
> else is unauthorized.
> If you are not the
> intended recipient, an
use odt format for the containing document,
LibreOffice is fine and James' suggestion is a good one. It is probably
OK with doc format too, for most purposes. However, if you are
collaborating with people who are not able or willing to avoid the use
of docx format, using LibreOffice
***
> Jacob Pearson Keller
> Northwestern University
> Medical Scientist Training Program
> email: j-kell...@northwestern.edu
> ***
>
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
itors are really suitable for Java development once the amount of code
involved becomes large: the traditional "write, compile, fix, compile,
fix..." approach starts to break down then. Syntax highlighting is nice
but only gets you so far.
My 2p worth
Regards,
Peter.
--
Peter Ke
n if we mounted arbitrary?
> >
> >
> > 4)What should we make clear before collecting anomalous signal
> > data ?
> >
> >
> > Thanks in advance.
> >
> >
> > With regards
> >
> > B. Vijay
> >
> >
>
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
ailable
to download from <http://www.bbc.co.uk/podcasts/series/iot>.
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
t it could be a day
or two afterwards. These podcasts also don't expire or disappear: you
can download them years after the original broadcasts.
Options (ii) and (iii) will get you the full rather than the shortened
version of the programme.
Regards,
Peter.
On Thu, 2012-11-22 at 10:30 +, Pete
On Thu, 2012-11-22 at 13:52 +, Peter Keller wrote:
> (ii) Using iPlayer after the second broadcast has finished. Go to the
> programme page at <http://www.bbc.co.uk/programmes/b01p0s9s> and click
> on the "Listen now" button on the left of the picture illustr
n
> > announce crystallography as the next subject :)
> >
> > m
> >
> >> -Original Message-
> >> From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
> >> Peter Keller
> >> Sent: 22 November 2012 13:52
> >> To: c
ham).
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
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ns_code
85 .
85 1
85 2
86 .
it can be really hard to sort out later on.
Regards,
Peter.
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
Sheraton House,
Castle Park,
Cambridge CB3 0AX
United Kingdom
phers, who do not have
a background in software development or data management. Advocating and
supporting git (or indeed any content/version management system) for
those kind of users is a losing battle: they see it as an unnecessary
complication to their daily work, and will av
modern man in a post-modern world
MacCHESS, Cornell University
schul...@cornell.edu
--
Peter Keller Tel.: +44 (0)1223 353033
Global Phasing Ltd., Fax.: +44 (0)1223 366889
S
d in or with
the message.
Diamond Light Source Limited (company no. 4375679).
Registered in England and Wales with its registered office
at Diamond House, Harwell Science and Innovation Campus,
Didcot, Oxfordshire, OX11 0DE, United Kingdom
--
John Berrisford
PDBe
European Bioinformatics Ins
, Charles Ballard wrote:
Dear All
a little clunky, but here are the instructions. Streaming starts for
the what's new at 9am GMT tomorrow
Go to
http://www.stfc.ac.uk/about-us/our-purpose-and-priorities/freedom-of-information/webinars/
And the select your device type.
Charles
--
Peter K
Hi,
I've used two perixx ergonomic mice and really liked them - they were
big enough to support my hand completely which some of the alternatives
aren't. Unfortunately I found them both unreliable in the medium term:
after a while the direction of the scroll wheel started to flip
randomly. On
On 20/03/2025 12:28, Andrew Gnann wrote:
Look into options like lockdown mode on Android.
... and if you have a Pixel phone (6, 7, 8 or 9) or Pixel tablet also
consider switching to GrapheneOS.
On Thu, Mar 20, 2025, 7:26 PM Goldman, Adrian
wrote:
Oh, and on the same topic: if I rem
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