, 19 de julho de 2024 14:56
Para: CCP4BB@JISCMAIL.AC.UK
Assunto: Re: [ccp4bb] how to create a figure of a blob
I am afraid I don't have knowledge of pymol options but can't one make a
separate pdb file with a dummy atom at the desired position so that the map is
centred there and then t
I am afraid I don't have knowledge of pymol options but can't one make a
separate pdb file with a dummy atom at the desired position so that the map is
centred there and then turn that molecule/atom off for the rendering step with
the main molecule left on. Probably I completely misunderstood. C
On 19/07/2024 09:11, Harry Powell wrote:
Hi
I was wondering if moorhen might be useful for this?
Yes.., yes it might.
(moorhen.org)
If one is going down that particular road then I'd recommend the following
Preferences -> Map Contouring Settings -> Map Sampling Rate to maybe 2.5
or so - o
Hi
I was wondering if moorhen might be useful for this?
Harry
> On 18 Jul 2024, at 18:35, Paul Emsley wrote:
>
> On 7/18/24 15:33, Andrea Smith wrote:
>>
>> I have a “green blob” in my map and I want to create a picture of it. What
>> is the best option to do this?
>>
>> [...]
>>
>> Is pri
On 7/18/24 15:33, Andrea Smith wrote:
I have a “green blob” in my map and I want to create a picture of it.
What is the best option to do this?
[...]
Is printscreen from Coot my only option?
Density figures from Coot 1 can look, if I may be so bold, pretty good.
See, for example Catapano
Institute
London, UK
==
about.me/david_briggs<http://about.me/david_briggs>
From: CCP4 bulletin board on behalf of Andrea Smith
Sent: Thursday, July 18, 2024 3:34:06 pm
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] how to create a figure of a blob
Ex
I use ccp4 to create Fo-Fc or 2Fo-Fc omit maps, then read them into Pymol
and display them with the isomesh command with an appropriate carve radius.
That might pick up an unmodelled blob.
__
Roger Rowlett
On Thu, Jul 18, 2024, 10:33 AM Andrea Smith
wrote:
> Hi,
>
>
>
> I have a
Hi,
I have a “green blob” in my map and I want to create a picture of it. What is
the best option to do this?
Normally, to make figures of maps, I use pymol's "display ccp4 maps", but pymol
shows maps around “site”. So if I don't fit anything into my blob, I can't
create a “site” and displa
