I am afraid I don't have knowledge of pymol options but can't one make a separate pdb file with a dummy atom at the desired position so that the map is centred there and then turn that molecule/atom off for the rendering step with the main molecule left on. Probably I completely misunderstood. CueMol does this, too.
Best wishes, Jon Cooper. [email protected] Sent from Proton Mail Android -------- Original Message -------- On 18/07/2024 15:33, Andrea Smith wrote: > Hi, > > I have a “green blob” in my map and I want to create a picture of it. What is > the best option to do this? > > Normally, to make figures of maps, I use pymol's "display ccp4 maps", but > pymol shows maps around “site”. So if I don't fit anything into my blob, I > can't create a “site” and display the map. > > Is printscreen from Coot my only option? > > Thank you for suggestions, > > Andrea > > --------------------------------------------------------------- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
