This worked Thanks!
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Hi Marco
You could always try the CCP4 tools (since this is the CCP4 BB…) “superpose” or
“gesamt” to superpose (or is it “superimpose”? discuss…).
Harry
> On 28 Feb 2024, at 00:53, Marco Bravo wrote:
>
> Hello all,
> Does anyone know how to save a superimposed pymol or chimerax session as a
Dear Marco,
> Refmac: Input coordinate file is not complete
Probably the CRYST1 record (unit cell and space group information) is
missing in your pdb file. You could copy this from another pdb file
(and may need to correct it).
Best regards,
Keitaro
On Wed, 28 Feb 2024 at 09:54, Marco Bravo wr
Hi Marco,
"Superpose" in *Coot* will also take any associated ligands along during
the superposition. You can do this under "Calculate-> SSM Superpose". Be
sure to check "move copy of moving structure". The one that moves will show
as "copy of xxx", with xxx being the name of the one that was move
Hi Marco,
You could use the 'combine' command. You could select two models in
chimeraX and which will write a single pdb file. Look at the below link.
https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/combine.html
Best,
Rajiv
On Tue, 27 Feb, 2024, 7:54 pm Marco Bravo, wrote:
> Hello all
Hello all,
Does anyone know how to save a superimposed pymol or chimerax session as a PDB
file in correct format so that I can used it for ccp4 refmac? I am trying to
superimpose a protein with DNA bound onto the same protein from a different
species without the DNA. I just want the DNA from the
