Hi Marco, You could use the 'combine' command. You could select two models in chimeraX and which will write a single pdb file. Look at the below link.
https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/combine.html Best, Rajiv On Tue, 27 Feb, 2024, 7:54 pm Marco Bravo, <mbrav...@ucr.edu> wrote: > Hello all, > Does anyone know how to save a superimposed pymol or chimerax session as a > PDB file in correct format so that I can used it for ccp4 refmac? I am > trying to superimpose a protein with DNA bound onto the same protein from a > different species without the DNA. I just want the DNA from the protein-DNA > complex to be superimposed onto the apo protein structure. I have done the > superimposition and got rid of the protein from the original protein-DNA > complex and now have the DNA with the apo protein structure. When I try to > use this new PDB filer for refmac or even MR I get this error. Refmac: > Input coordinate file is not complete. Does anyone know how to properly do > this ? > > Thank you > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
