Hello all, Does anyone know how to save a superimposed pymol or chimerax session as a PDB file in correct format so that I can used it for ccp4 refmac? I am trying to superimpose a protein with DNA bound onto the same protein from a different species without the DNA. I just want the DNA from the protein-DNA complex to be superimposed onto the apo protein structure. I have done the superimposition and got rid of the protein from the original protein-DNA complex and now have the DNA with the apo protein structure. When I try to use this new PDB filer for refmac or even MR I get this error. Refmac: Input coordinate file is not complete. Does anyone know how to properly do this ?
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