Re: [ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC

: Re: [ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC [You don't often get email from b.lohk...@gmail.com. Learn why this is important at https://aka.ms/LearnAboutSenderIdentification ] CAUTION: This email came from outside of the University. To

Re: [ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC

On 15/05/2024 19:03, Paul Emsley wrote: On 13/05/2024 17:38, Otsile Mojanaga wrote: *From:*Otsile Mojanaga *Sent:* Monday, May 13, 2024 3:29 PM *To:* Paul Emsley *Subject:* RE: [ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC Dear Paul/All Thank

Re: [ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC

On 13/05/2024 17:38, Otsile Mojanaga wrote: *From:*Otsile Mojanaga *Sent:* Monday, May 13, 2024 3:29 PM *To:* Paul Emsley *Subject:* RE: [ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC Dear Paul/All Thank you for the response. I am on Windows 11

Re: [ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC

From: Otsile Mojanaga Sent: Monday, May 13, 2024 3:29 PM To: Paul Emsley Subject: RE: [ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC Dear Paul/All Thank you for the response. I am on Windows 11 and I tried looking around Coot to see where I could

Re: [ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC

On 13/05/2024 13:03, Otsile Mojanaga wrote: Dear All I have been using coot as part of my normal workflow but since last week I have been having issues with Coot after I built my own PC which contains the following Hardware: CPU - AMD Ryzen 9 5950X 16-Core Processor - 16 Cores, 32 Threads

[ccp4bb] Request for help in optimizing Coot for AMD 5950x CPU and RX6600XT GPU hardware PC

Dear All I have been using coot as part of my normal workflow but since last week I have been having issues with Coot after I built my own PC which contains the following Hardware: CPU - AMD Ryzen 9 5950X 16-Core Processor - 16 Cores, 32 Threads RAM - 64 GB GPU - AMD Radeon RX 6600 XT - Primary/D

Re: [ccp4bb] Request for assistance with structure solution

Thank you @Yehudi BLOCH, Kay for the help.  Kind Regards, Adewumi Adeyeye, (PhD Candidate)Department of Biochemistry, Genetics, and Microbiology Structural Biology Group, Room 3-7, Agricultural Sciences Building, University of Pretoria c/o University & Lynnwood Roads Hatfield Pretoria 0083

Re: [ccp4bb] Request for assistance with structure solution

good detective work indeed! Kay On Tue, 16 Apr 2024 14:40:15 +0100, Yehudi BLOCH wrote: >Dear Adewumi > >I'm afraid the 85% complete dataset is a contaminant as well. >PDB 2r6s and related entries for E.coli Gab protein have near identical unit >cell parameters. The autoprocessed (?) .mtz file

Re: [ccp4bb] Request for assistance with structure solution

Dear Adewumi I'm afraid the 85% complete dataset is a contaminant as well. PDB 2r6s and related entries for E.coli Gab protein have near identical unit cell parameters. The autoprocessed (?) .mtz file you attached also solves with this E.coli protein. I suppose that if you rerun XDS with the giv

Re: [ccp4bb] Request for assistance with structure solution

Good morning Adewumi Adeyeye, I'll look at the problem but I need the raw data. Please upload the *.h5 files from this crystal to some cloud service, and send me the link. Best wishes, Kay Am 12.04.24 um 10:40 schrieb Adewumi Adeyeye: Good day, I am writing to seek your help with resolving

Re: [ccp4bb] request for applications

Oh, gosh. Pete, I am sorry but I had already submitted a proposal. As you say nanogravity is surely next up and then picogravity. While I am waiting for Elon to get back to me I have been looking into an ultimate brightness ‘top pocket synchrotron’. This single electron device has the smallest e

Re: [ccp4bb] request for applications

To clarify, the simulations would be money-intensive. The interpretation would (at first!) be people-intensive. -Original Message- From: CCP4 bulletin board On Behalf Of Hekstra, Doeke Romke Sent: Tuesday, April 2, 2024 9:00 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] request

Re: [ccp4bb] request for applications

Dunten Sent: Tuesday, April 2, 2024 3:49 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] request for applications The obvious project worthy of such funding is crystallization in ultra low gravity.  Perfectly formed crystals are priceless and the basis for advances in structural biology.  Cryst

Re: [ccp4bb] request for applications

The obvious project worthy of such funding is crystallization in ultra low gravity.  Perfectly formed crystals are priceless and the basis for advances in structural biology.  Crystal growth on the ISS, in orbit 254 miles above the Earth, is considered growth in microgravity.  Now consider the M

Re: [ccp4bb] request for applications

> what would YOU do if you had $1e12 USD for your science? (a) Embezzle most of and (b) do sociologically relevant research with the rest, like https://www.ruppweb.org/Garland/PICD.html Best, BR - Bernhard Rupp k.k. Hofkristallamt

Re: [ccp4bb] request for applications

On Mon, Apr 01, 2024, James Holton wrote: My question for the BB is: what would YOU do if you had $1e12 USD for your science? No non-scientific proposals please. There are plenty of other forums for those.  This BB is about biological structural science, so please stay on-topic.  OK?  And now

Re: [ccp4bb] request for applications

? Sent from tiny silly touch screen *From:* James Holton *Sent:* Monday, 1 April 2024 08:01 *To:* CCP4BB@JISCMAIL.AC.UK *Subject:* [ccp4bb] request for applications Hey Everyone, It may sound like an incredibly boring thing that

Re: [ccp4bb] request for applications

mail.ac.uk> wrote: > >> Oh dear, your prime number oversupply crashed the crypto Ponzi scheme >> market. Will you accept $10e2 proposals now? >> >> Sent from tiny silly touch screen >> -- >> *From:* James Holton >> *Sent:* Mon

Re: [ccp4bb] request for applications

I'm sorry Phil, but your application has been administratively rejected because it did not conform to the bioscience-only stipulation that was clearly stated in the RFA. We look forward to an improved version of your proposal in the future, and please try to read the instructions more carefull

Re: [ccp4bb] request for applications

the crypto Ponzi schememarket.  Will you accept $10e2 proposals now? Sent from tiny silly touch screen *From:* James Holton *Sent:* Monday, 1 April 2024 08:01 *To:* CCP4BB@JISCMAIL.AC.UK *Subject:* [ccp

Re: [ccp4bb] request for applications

:: I expect to have ~ $1e12 USD on current ledgers. Presumably via the Bankman-Fried algorithm Phil On 4/1/24 3:01 AM, James Holton wrote: Hey Everyone, It may sound like an incredibly boring thing that there has never been a formal mathematical proof that finding the prime factors of very l

Re: [ccp4bb] request for applications

accept $10e2 proposals now? > > Sent from tiny silly touch screen > -- > *From:* James Holton > *Sent:* Monday, 1 April 2024 08:01 > *To:* CCP4BB@JISCMAIL.AC.UK > *Subject:* [ccp4bb] request for applications > > Hey Everyone, > > It may sou

Re: [ccp4bb] request for applications

Oh dear, your prime number oversupply crashed the crypto Ponzi scheme market. Will you accept $10e2 proposals now? Sent from tiny silly touch screen From: James Holton Sent: Monday, 1 April 2024 08:01 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] request for

[ccp4bb] request for applications

Hey Everyone, It may sound like an incredibly boring thing that there has never been a formal mathematical proof that finding the prime factors of very large numbers doesn't have a more efficient algorithm than simply trying every single one of them. Nevertheless, to this day, encryption keys

[ccp4bb] Request for Donation of Used Equipment

Dear Research Community, I am writing on behalf of Biologic, a non-profit organization composed of young researchers and PhD. students dedicated to advancing scientific research in the field of biology. Our organization ( www.biologic-research.com) is committed to conducting research in environme

[ccp4bb] Request of information from EOSC-Life

Dear Colleagues, Our colleagues working in EOSC-Life invites you to take part and help shape the future policies, specifications and tools for handling sensitive data in the life science community. If you process, store, share or reuse sensitive data (e.g. personally identifiable medical image

Re: [ccp4bb] request for basic crystallography online classes

Dr. Natesh, Thank you very much for your suggestion and for sharing the Online crystallography certificate course link. Sincerely, Venkat On Wed, Jul 22, 2020 at 11:20 AM Natesh Ramanathan wrote: > Dear Venkata, > > Check with Birkbeck online crystallography certificate course here: > http://w

Re: [ccp4bb] request for basic crystallography online classes

Dear Venkata, Check with Birkbeck online crystallography certificate course here: http://www.bbk.ac.uk/study/2020/postgraduate/programmes/TPCCRPRO_C/. Best wishes, Natesh On Wed, 22 Jul 2020 at 09:22, venkata narayana Are < venkat.sai.biochemis...@gmail.com> wrote: > Dear Sir, > > My self Venka

[ccp4bb] request for basic crystallography online classes

Dear Sir, My self Venkat completed Ph.D. in Biochemistry (structural biology) later on joined in a short project where I learned cell biology and virology. I have solved 15 structures during my Ph.D., further I wanting to learn membrane protein receptors structural biology and other complex protei

Re: [ccp4bb] request for help about a 2-crystal drawing tool...

Thanks Ethan, it’s the one I am looking for…. you are right, I cannot run it directly… With the name, I was able to find the original web site at EPFL and download the applet : https://www.epfl.ch/schools/sb/research/iphys/teaching/crystallography/escher-web-sketch/

Re: [ccp4bb] request for help about a 2-crystal drawing tool...

On Sunday, 25 August 2019 18:28:35 Laurent Maveyraud wrote: > Dear CCP4ers, > > a long time ago (something like 10 years, or even more), I used an applet > available on the internet for drawing small schematic 2D crystals (see > below). You had the possibility to draw a small motif (in my case s

Re: [ccp4bb] request for help about a 2-crystal drawing tool...

Did you try KaleidoPaint (for iPad)? Best, E > On Aug 25, 2019, at 12:28 PM, Laurent Maveyraud > wrote: > > Dear CCP4ers, > > a long time ago (something like 10 years, or even more), I used an applet > available on the internet for drawing small schematic 2D crystals (see > below). You had

[ccp4bb] Request for Proposals - Crystallization on the International Space Station

2018 Microgravity Molecular Crystal Growth Utilization Solicitation Microgravity has been used for more than 30 years to improve outcomes of crystal analyses through production of higher quality and larger crystals. The ISS National Laboratory continues to support efforts for repetitive, low-cos

[ccp4bb] Request for session proposals for ACA Toronto 2018

Colleagues, My apologies for sending this message to CCP4BB, but I wanted to make sure to reach as many BioMac SIG members and other potential attendees as possible. The Biological Macromolecules Scientific Interest Group (BioMac) of the American Crystallographic Association requests your inpu

Re: [ccp4bb] Request

Dear Neeraj, Do you mean the H3C protease ( trade name: PreScission protease provided by GE)? This protease can specifically cleavage the sequence encode by plasmid pGEX-6p, which possess the GST tag. Best wishes! Lu Zuokun -- 卢作焜 南开大学新生物站A202 Lu Zuokun, Ph.D. Candidate College of

[ccp4bb] Request

Hello BBians, sorry for the off-topic question. I have plasmid which possess the precision protease site to get rid of GST tag. Does anybody have precision protease plasmid. If someone has please share with me. I will be very thankful for you. Neeraj -- = Neeraj Kr. Mishra

[ccp4bb] Request for nominations

The American Crystallographic Association is currently accepting nominations for the Margaret C. Etter Early Career Award. This award recognizes outstanding achievement and exceptional potential in crystallographic research demonstrated by a scientist at an early stage of their independent care

Re: [ccp4bb] Request for def.site for HKL2000 for ESRF-BM14 MAR 225 CCD

Dear All, I got the file. Thanks a lot for the same. I apologize for posting a 'non-CCP4' question to the CCP4BB. With regards S.Karthikeyan > Dear All, > > I am looking for def.site file for HKL2000 used in ESRF-BM14 beam line. We > collected the data using MAR 225 CCD detector. The following

[ccp4bb] Request for def.site for HKL2000 for ESRF-BM14 MAR 225 CCD

Dear All, I am looking for def.site file for HKL2000 used in ESRF-BM14 beam line. We collected the data using MAR 225 CCD detector. The following link does not seem to work for me. http://www.esrf.fr/exp_facilities/BM14/runexperiment/bm14-def.site We need this file to process our data in the hom

Re: [ccp4bb] Request recommendation for the peptide synthesis company

For something that large, would it be easier and cheaper to make E. coli do it? Say, fuse your sequence to ubiquitin? Phoebe Original message >Date: Mon, 1 Jun 2009 12:09:00 -0400 >From: Pius Padayatti >Subject: Re: [ccp4bb] Request recommendation for the peptide

Re: [ccp4bb] Request recommendation for the peptide synthesis company

ping, we had great success as far as price and level of synthesis with a company called Synbiosci, Livermore, CA. I am no way connected to this company but just a suggestion. hope it helps psp On Mon, Jun 1, 2009 at 10:31 AM, ping sun wrote: > Dear All, > > I would appreciate if anyone could rec

[ccp4bb] Request recommendation for the peptide synthesis company

Dear All, I would appreciate if anyone could recommend any company for long peptide synthesis? It will be better if it is reliable and reasonable priced. The peptide we want to synthesis is around 40-50aa long, should be HPLC grade and above 98% purity. Thank you! Ping Sun National Cancer Ins