Hi,
You can save the rigid fit model w.r.t the density map in chimera, then
load them in phenix to start real space refinement.
Regards
Subhomoi
On Thu, 19 Dec, 2024, 6:24 pm tim smith, wrote:
> Thank you all for your responses. I was confused after open file in coot
> and did some regid refi
Thank you all for your responses. I was confused after open file in coot
and did some regid refinements. That file was saved, after this what I
understood I can use this file for phenix real space refinements right or
without doing in coot can do directly?. Can any suggest me my fit doesn't
look li
I guess you mean that you’ve done an initial global rigid body fit and you
still want to do some refinement to get better local fits?
Refmac servalcat is a good option and uses two half maps in MRC format. It
comes as part of ccpem but does require ccp4 to be installed too
Or alternatively, you
On 18/12/2024 18:17, tim smith wrote:
Hi all,
Can you please advise once we fit the map and open in coot. What is
next step to do in coot.
I am somewhat confused. Once you have done the fitting then you're done.
Right? You can run your model through (another) refinement program
before you a
Hi all,
Can you please advise once we fit the map and open in coot. What is next
step to do in coot. I tried refmac but that required ccp4 file which
doesn't have. Please some one can help in elaborating and sharing any
tutorial would be helpful. I'm new bie and first time I am trying model
buildi
