On 18/12/2024 18:17, tim smith wrote:
Hi all,
Can you please advise once we fit the map and open in coot. What is
next step to do in coot.
I am somewhat confused. Once you have done the fitting then you're done.
Right? You can run your model through (another) refinement program
before you analyse and deposit - servalcat springs to mind.
I tried refmac but that required ccp4 file which doesn't have.
Refmac is part of the CCP4 Suite. You need CCP4 to get Refmac.
One can build Servalcat from source -
https://github.com/keitaroyam/servalcat - and that doesn't need CCP4 -
however I doubt that is easy for "newbies."
Please some one can help in elaborating and sharing any tutorial would
be helpful. I'm new bie and first time I am trying model building.
There are some cryo-EM tutorial on my blog:
https://pemsley.github.io/coot/blog/
e..g this one:
https://pemsley.github.io/coot/blog/2022/08/27/Coot-Cryo-EM-Tutorial-Part-1.html
There are some tutorials on YouTube (e.g. sbgrid) I should make more.
Paul
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