Dear Hari
Thanks for the report - I tried this and see the same thing. I will
investigate and attempt to fix it.
Best wishes
Peter
hari jayaram wrote:
> Hi I am having a
>
> "can't read "array(TEXTFRAME)": no such variable "
>
> error when I perform the following action with ccp4i .
>
> View
Not sure if this is relevant, however as an addendum: a couple of years
ago I looked at some data from a colleague using AREAIMOL and learned
that while it's not intuitively obvious, it is possible that the
calculated accessible surface area buried on one subunit may differ from
that buried on the
Dear Kristof
If you go into "System Administration" -> "Configure Interface" (on the
LHS of the CCP4i main window) and then scroll down to the bottom of the
window that comes up, you should see a folder called "Fonts".
If you click on this folder and open it up then you will see various
options t
he command in the editor that pops up.
>
> Serge.
>
> Le 13 mars 08 à 10:17, P.J.Briggs a écrit :
>
>> Hello Serge
>
>> I have to say that your message wasn't very clear to me, but Leo's email
>> made me wonder if this isn't related to a bug in CCP
Hello Serge
I have to say that your message wasn't very clear to me, but Leo's email
made me wonder if this isn't related to a bug in CCP4i in the 6.0.99
releases, which meant that only a subset of labels were made available
to the user for things like the weighting.
This was a bug introduced aft
Hi Derek
There's not really any way of doing what you're asking at present. If
merging utility would be useful to others then I would be prepared to
look into providing one, although there are a bunch of fiddly issues to
deal with (e.g. keeping dates consistent, handling file name clashes and
so o
Dear Yuhua
I think that you may have failed to specify a solvent content fraction
before attempting to run DM - please try rerunning the job and checking
the "Required Parameters" folder about halfway down the window. If the
box next to the text "Fraction solvent content" is empty and coloured
yel
Dear James
Generally the best people to contact about this sort of news are the
CCP4 staff at Daresbury, [EMAIL PROTECTED]
I'm sure that I've missed something, however - both the Exit button and
the window close operation on the main window (which I understood to be
bound to WM_DELETE_WINDOW, see
ust above the CLIBD_MON section
>
> would these need to be changed as well?
>
> Also still no word out there from you all about PHASER =)
>
> Thanks everyone, the advice on this board is fantastic
>
> Ainsley
>
> P.J.Briggs wrote:
>> Dear Ainsley
>
Dear Ainsley
I'm not sure which file you took from Garib's page, however the CCP4i
"install" options (under the "System Administration" menu) are only for
installing new interfaces and not for updating the programs themselves.
I just took a look at the files on Garib's page, and downloaded the fi
Dear CCP4bbers
The CCP4 helpdesk at [EMAIL PROTECTED] will now effectively be unstaffed
until 2nd January 2008, so our apologies in advance if you send
questions to us regarding usage or bugs in the suite before then - it
may take a little longer before you hear back.
(There will however be some
Hi Bernhard & CCP4bb
The pre-1998 CCP4 Study Weekend Proceedings are available from the
Daresbury Lab e-pubs ("electronic publications", for those not familiar
with e-speak) system via:
http://epubs.cclrc.ac.uk/search?st=browse-by-serial&s=1764
(I checked and the one Ian mentions is there).
The
Dear Xue yuan
What file are you trying to install into CCP4i? The CCP4i interface for
the SHELX programs is already included in CCP4 6.0.2 and so you should
not have to install it yourself.
However, in order for it to work you need the SHELX programs themselves
to accessible on your system - this
Hi Bill
I mean to pick this up earlier in the week but somehow it slipped
through my net. Sorry.
Anyhows: pack_c.c and pack_f.f are not programs but essentially
subroutine libraries. You would need to write your own program to
actually use them (I'm not sure that there's any documentation btw...)
Hi Klass
Thanks for your comments, however it appears that neither
CCP4_PARSER_MAXLINELENGTH nor CCP4_PARSER_MAXFILENAMELENGTH are actually
used in the CCP4 parser code now. I think that they were left over from
the initial implementation (I will clear them out for future releases),
and my underst
Dear Deliang
The SURFACE program is still included in the current version of the
suite, so you should be able to run it from the command line or from a a
script. However there is no CCP4i interface to SURFACE, so you cannot
run it that way.
There is an interface to the AREAIMOL program which give
Hi Dale
Sorry you've found a problem with the import task, you're right that
this is must a rarely exercised piece of code since I think that the
problem is actually a syntax error in this section.
I think that the following change to the file "import.script" (which
resides in $CCP4/ccp4i/scripts
Hello Taiana
AREAIMOL can be used to calculate this kind of accessible area
difference, the easiest way to do it is to use the "Accessible Surface
Area" task in the "Structure Analysis" module of CCP4i.
In the interface window for this task, select the mode to "Run AreaIMol
to calculate [area dif
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