Re: [ccp4bb] secondary structure assignment to sequence

Dear Vitali, I used to do it with Stride server. https://webclu.bio.wzw.tum.de/cgi-bin/stride/stridecgi.py Hope this helps, Best wishes, Marc https://webclu.bio.wzw.tum.de/cgi-bin/stride/stridecgi.py — Marc GRAILLE, PhD DR1-CNRS Head of the team: “Translation and degradation of eukaryotic

[ccp4bb] Server to find structural similarity between nucleic acid structures

Hello, I am looking for a server that finds structural similarities between the structure of an RNA and all RNA structures present in the PDB, pretty much like DALI or PDB-eFold do for proteins. Does anyone know if such server exists? Thanks a loot for your help, Best wishes, Marc — Marc

[ccp4bb] Alternatives to X

ns or pre-publications related to my research interests. I notice that many scientists have deserted X in recent months. Can anyone suggest user-friendly alternatives used by the scientific communities to announce recent publications or news in their fields? Best wishes, Marc — Marc GRAILLE, Ph

[ccp4bb] Looking for a post-doc with solid knowledge in cryo-EM

. Applications (including a detailed CV, summary of your current project and relevant skills and a contact information of two/three references) or information requests should be sent to Marc Graille (marc.grai...@polytechnique.edu). Website: http://bioc.polytechnique.fr/spip.php?rubrique117&lang=en &

Re: [ccp4bb] Problem with fonts in Coot

Hi Mark and Martin, I tried both and they all fixed my problem. thanks a lot for your suggestions. Best wishes, Marc — Marc GRAILLE, PhD DR1-CNRS Laboratoire de Biologie Structurale de la Cellule (BIOC; Ex-Laboratoire de Biochimie) UMR7654 du CNRS Head of the team: “Translation and

Re: [ccp4bb] possible solution with Phaser

2Fo-Fc electron density map to locate the 4th molecule using MolRep and its option “Search in a map”. In this case, feed MolRep with the coordinates of the 3 correctly placed monomers as fixed model. It worked many times in my case. Hope this helps. Marc — Marc GRAILLE, PhD DR1-CNRS

Re: [ccp4bb] Issue with high Rfree (0.25) for a high-resolution dataset (1.05 Ang)

nto a single one using all reflections from the “low resolution” dataset and for instance data from 5 to 1A for the high resolution data (to exclude overloads). It may improve the Rmeas values at low resolution.My two cents.Marc Marc GRAILLE, PhDDirecteur de recherche CNRSLaboratoire de Biochimie

Re: [ccp4bb] Density for an unknown ligand

mpound. Looking forward to more suggestions.BestWei Marc GRAILLE, PhDDirecteur de recherche CNRSLaboratoire de BiochimieECOLE POLYTECHNIQUE - UMR7654 CNRS91128 PALAISEAU CEDEX
Phone : +33 (0)1 69 33 48 90 – Fax : +33 (0)1 69 33 49 09
Email: marc.grai...@polytechnique.eduTeam: Translation and degradat

[ccp4bb] Graphics cards for Coot, Pymol, Chimera on MacBook Pro Laptop

graphics cards but I don’t know which one is fine for the programs I want to run. Can some of you share advices/feedback with me? Thanks a lot for your answer. Best wishes, Marc Dr Marc GRAILLE Directeur de recherche CNRS Team: Translation and degradation of eukaryotic mRNAs Team supported by the

[ccp4bb] 2 years Post-doc position near Paris (France)

available at Laboratory of Biochemistry, Ecole Polytechnique-CNRS (France). The successful candidate will work in a young and dynamic international team headed by Dr Marc Graille. He/She should have a PhD in protein biochemistry/structural biology. Expertises in cloning, protein purification and X

[ccp4bb] Post-doc position in Structural Biology of RNA decay components near Paris (France)

The project will be carried-out under the supervision of Dr Marc Graille at IBBMC (Orsay, Paris-Sud University, France) in close collaboration with Dr Dominique Durand (IBBMC) for SAXS studies and Dr Séraphin (IGBMC, Illkirch, France) for functional studies. For recent publications relate

[ccp4bb] MALLS equipment: SUMMARY

appropriate than Akta purifier because on this latter, the pumps have a very short "oscillation" time, creating some serious noise. More advices are still welcome. Yours Marc -- Marc Graille, PhD Yeast Structural Genomics, IBBMC CNRS UMR8619 Bat 430 Universite Paris Sud 91405 Orsay

[ccp4bb] MALLS equipment

. Sincerely -- Marc Graille, PhD Yeast Structural Genomics, IBBMC CNRS UMR8619 Bat 430 Universite Paris Sud 91405 Orsay Cedex NEW PHONE NUMBER Tel: (33) 1 69 15 31 57 Fax: (33) 1 69 85 37 15

[ccp4bb]

live.com/RediscoverHotmail?ocid=TXT_TAGLM_WL_HM_Rediscover_Mobile1_042009> -- Marc Graille, PhD Yeast Structural Genomics, IBBMC CNRS UMR8619 Bat 430 Universite Paris Sud 91405 Orsay Cedex NEW PHONE NUMBER Tel: (33) 1 69 15 31 57 Fax: (33) 1 69 85 37 15

[ccp4bb] Turbo in stereo

heron 8.04 and my graphics card is a NVIDIA Quadro FX3700. I have tried to edit my xorg.conf file but without any success. Thank you very much for suggestions! Cheers, Marc -- Marc Graille, PhD Yeast Structural Genomics, IBBMC CNRS UMR8619 Bat 430 Universite Paris Sud 91405 Orsay Cedex NEW