ocation
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Moonlight2R)
On Fri, Apr 4, 2025 at 3:31 PM Martin Grigorov
mailto:mgrigo...@apache.org>> wrote:
Hi,
On Fri, 4 Apr 2025 at 1
aded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Moonlight2R)
On Fri, Apr 4, 2025 at 3:31 PM Martin Grigorov
mailto:mgrigo...@apache.org>> wrote:
Hi,
On Fri, 4 Apr 2025 at 14:00, Matteo Tiberti via Bioc-devel
mailto:bioc-devel@r-p
Dear all,
We are seeing the same warning from the builders for our MoonlightR and
Moonlight2R packages, on kungpeng2 only:
* checking whether package �Moonlight2R� can be installed ... WARNING
Found the following significant warnings:
Warning: 'rgl.init' failed, will use the null device.
War
.20/bioc-LATEST/MoonlightR/kunpeng2-buildsrc.html<https://bioconductor.org/checkResults/3.20/bioc-LATEST/MoonlightR/kunpeng2-buildsrc.html>
This issue has been fixed earlier today. It was reported by Oleksii here on the
mailing list.
It should be OK in the next build (tomorrow).
Sorry for the inconvenience!
Dear developers,
We have a couple of warnings from the builders from our MoonlightR and
Moonlight2R packages, which we haven't had before:
Found the following significant warnings:
Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
See '/home/biocbuild/bbs-3.20-bioc/meat/Moonlight2
see if that helps.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
____
From: Bioc-devel on behalf of Matteo Tiberti via
Bioc-d
ioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
____
From: Bioc-devel on behalf of Matteo Tiberti via
Bioc-devel
Sent: Thursday, August 29, 2024 10:
Dear maintainers,
we've been having a build fail on Palomino7 (Windows builder) for our
Moonlight2R package release branch (3.19), one of our tests fails. I cannot
reproduce this fail locally and looks like it might be an issue with data from
AnnotationHub:
── Error ('test-DMA.R:14:1'): (code
R:117:3
3. EpiMix:::MethylMix_MixtureModel(...)
4. ... %dopar% ...
...
7. parallel:::sendCall(cl[[i]], fun, list(...))
8. parallel:::postNode(...)
10. parallel:::sendData.SOCKnode(...)
11. base::serialize(data, node$con)
13. base::summary.connection(connection)
Execution halted
```
On 3/15/24
Dear developers,
we've been getting a build fail for our Moonlight2R package on Windows only, during
vignette build in CHECK, which just prints out an "invalid connection" error:
Quitting from lines 727-746 [unnamed-chunk-20] (Moonlight2R.Rmd)
Error: processing vignette 'Moonlight2R.Rmd' failed
herd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
____
From: Bioc-devel on behalf of Matteo Tiberti via
Bioc-devel
Sent: Monday, March 11,
Dear BioC developers,
We are getting a strange test fail for our Moonlight2R package when tests are
run on nebbiolo1 (Linux) only:
ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Error: Corrupt Cache: index file
See AnnotationHub's TroubleshootingTheHubs vigne
&utm_campaign=medarbejderemail&utm_content=cancerdk>
www.cancer.dk<https://www.cancer.dk/international/> | Our privacy
policy<https://www.cancer.dk/om-os/privatlivspolitik/>
From: Bioc-devel on behalf of Matteo Tiberti via
Bioc-devel
Date: Friday, 13 October 2023 at 09.
lusterProfiler
is a
>> heavy-weight dependency that triggers the loading of 120+
packages.
>> All together, loading Moonlight2R with library(Moonlight2R)
triggers
>> the loading of 170+ packages which takes about 20 seconds.
>>
>> Have y
e to
make library(Moonlight2R) lighter and faster.
Best,
H.
On 10/11/23 02:18, Matteo Tiberti via Bioc-devel wrote:
Dear all,
We are seeing a couple of build fails of our MoonlightR and Moonlight2R
packages in the devel (3.18) MacOS arm64 builder that seem to be related to the
MPO.db package
Dear all,
We are seeing a couple of build fails of our MoonlightR and Moonlight2R
packages in the devel (3.18) MacOS arm64 builder that seem to be related to the
MPO.db package. This is the error message we get:
* installing to library
‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resou
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