Dear BioC developers,
We are getting a strange test fail for our Moonlight2R package when tests are
run on nebbiolo1 (Linux) only:
ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Error: Corrupt Cache: index file
See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache
cache: /home/biocbuild/.cache/R/AnnotationHub
filename: annotationhub.index.rds
Backtrace:
▆
1. └─Moonlight2R::DMA(...) at test-DMA.R:14:1
2. └─Moonlight2R::LiftMAF(Infile = mut_only, Current_Build = "GRCh38")
3. └─AnnotationHub::AnnotationHub()
4. └─AnnotationHub::.Hub(...)
5. └─AnnotationHub:::.db_create_index(hub)
This doesn’t happen to us when testing locally, so we were wondering if there’s
any problem on the builder or is it anything we can fix ourselves?
Many thanks
Matteo Tiberti
Danish Cancer Institute
Strandboulevarden 49
DK-2100 Copenhagen
Telephone: +45 35 25 73 07
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