Hi Martin,

just to confirm that the new builds are in and the warning gone.

We still have yet another issue with downloading a file, but that is again I 
guess momentary (also because it's only on one of the builds)

thank you again and kind regards,


Matteo Tiberti

Danish Cancer Society Research Center
Strandboulevarden 49
DK-2100 Copenhagen
Telephone: +45 35 25 73 07


[https://i.xink.io/Images/Get/K116/d1.png]<https://www.cancer.dk/?utm_source=email&utm_medium=medarbejderemail&utm_campaign=medarbejderemail&utm_content=cancerdk>

www.cancer.dk<https://www.cancer.dk/international/> | Vores 
privatlivspolitik<https://www.cancer.dk/om-os/privatlivspolitik/>

________________________________
From: Martin Grigorov <martin.grigo...@gmail.com>
Sent: 07 April 2025 09:25
To: Matteo Tiberti <tibe...@cancer.dk>
Cc: bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: Re: [Bioc-devel] WARNING from Rgl package

Hi Matteo,

The problem has been fixed and the next build should be fine!

biocbuild@kunpeng2 ~/git> R CMD INSTALL Moonlight2R
* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘Moonlight2R’ ...
** this is package ‘Moonlight2R’ version ‘1.5.4’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Moonlight2R)

On Fri, Apr 4, 2025 at 3:31 PM Martin Grigorov 
<mgrigo...@apache.org<mailto:mgrigo...@apache.org>> wrote:
Hi,

On Fri, 4 Apr 2025 at 14:00, Matteo Tiberti via Bioc-devel 
<bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> wrote:
Dear all,

We are seeing the same warning from the builders for our MoonlightR and 
Moonlight2R packages, on kungpeng2 only:

* checking whether package ‘Moonlight2R’ can be installed ... WARNING
Found the following significant warnings:
  Warning: 'rgl.init' failed, will use the null device.
  Warning: no DISPLAY variable so Tk is not available
See ‘/home/biocbuild/bbs-3.21-bioc/meat/Moonlight2R.Rcheck/00install.out’ for 
details.


I’ll investigate this next week.


I assume this should be a problem with the builders, since it's triggered when 
the Rgl package is loaded there isn't very much we can do about it. Could you 
please let me know if this is the case, or is there anything we can do to fix 
it?

I also see Moonlight2R also raises an error in the last build cycle - that is 
because it couldn't download a file from the internet. I assume this is a 
temporary problem that would be fixed at the next build.


I guess so too.



Thank you and kind regards

Matteo Tiberti


Danish Cancer Society Research Center
Strandboulevarden 49
DK-2100 Copenhagen
Telephone: +45 35 25 73 07


[https://i.xink.io/Images/Get/K116/d1.png<https://i.xink.io/Images/Get/K116/d1.png>]<https://www.cancer.dk/?utm_source=email&utm_medium=medarbejderemail&utm_campaign=medarbejderemail&utm_content=cancerdk>
 | Vores privatlivspolitik<https://www.cancer.dk/om-os/privatlivspolitik/>


        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel<https://stat.ethz.ch/mailman/listinfo/bioc-devel>
        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

Reply via email to