Hervé, Martin,
Thank you so much, atena builds and checks cleanly now on kunpeng2 too!!
https://bioconductor.org/checkResults/3.18/bioc-LATEST/atena
cheers,
robert.
On 10/23/23 20:46, Hervé Pagès wrote:
>
> On 10/23/23 11:45, Martin Grigorov wrote:
>
>> Hi,
>>
>> > quickBamFlagSummary(eh[["EH
On 10/23/23 11:45, Martin Grigorov wrote:
> Hi,
>
> > quickBamFlagSummary(eh[["EH8081"]])
> see ?gDNAinRNAseqData and browseVignettes('gDNAinRNAseqData') for
> documentation
> loading from cache
> [E::hts_hopen] Failed to open file
> /home/biocbuild/.cache/R/ExperimentHub/1d1f2d2a8e1eab_8133
>
Hi Gregory,
Looks like GDAL is missing on nebbolo2. We're looking into this.
Thanks for letting us know,
H.
On 10/23/23 10:25, Gregory B. Gloor wrote:
> Hello,
>
> I received an error today on this machine for ALDEx2
>
> I last committed 12 days ago and until today it was building cleanly on
Hello,
I received an error today on this machine for ALDEx2
I last committed 12 days ago and until today it was building cleanly on
everything. I am not sure what I can do to fix the error since I don't know
what dependency is calling that library file
Any help appreciated
Greg
Hi Robert,
There's the possibility that some of these BAM files got corrupted when
downloaded to kunpeng2 local cache.
@Martin Gregorov: Would you be able to try to run the following on kunpeng2?
library(Rsamtools)
library(ExperimentHub)
eh <- ExperimentHub()
quickBamFlagSum
hi,
our package atena fails to build **only** in kunpeng2 Linux openEuler
22.03 LTS-SP1 / aarch64:
https://bioconductor.org/checkResults/3.18/bioc-LATEST/gDNAx/kunpeng2-buildsrc.html
concretely, the vignette fails to find a BAM file downloaded via
ExperimentHub. This does not happen in any o
Hello Bioconductor developers,
We are still on track for Bioconductor Release 3.18 for this Wednesday October
25th. This means that tonight is the last day to commit changes to the devel
branch before creation of the RELEASE_3_18 versions of your packages. And any
changes you make to your pac
