Hi Gregory, Looks like GDAL is missing on nebbolo2. We're looking into this.
Thanks for letting us know, H. On 10/23/23 10:25, Gregory B. Gloor wrote: > Hello, > > I received an error today on this machine for ALDEx2 > > I last committed 12 days ago and until today it was building cleanly on > everything. I am not sure what I can do to fix the error since I don't know > what dependency is calling that library file > > Any help appreciated > > Greg > > ############################################################################## > ############################################################################## > ### > ### Running command: > ### > ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs > --no-resave-data ALDEx2 > ### > ############################################################################## > ############################################################################## > > > * checking for file ‘ALDEx2/DESCRIPTION’ ... OK > * preparing ‘ALDEx2’: > * checking DESCRIPTION meta-information ... OK > * installing the package to build vignettes > * creating vignettes ... ERROR > --- re-building ‘ALDEx2_vignette.Rmd’ using rmarkdown > --- finished re-building ‘ALDEx2_vignette.Rmd’ > > --- re-building ‘scaleSim_vignette.Rmd’ using rmarkdown > > Quitting from lines 331-419 [graph] (scaleSim_vignette.Rmd) > Error: processing vignette 'scaleSim_vignette.Rmd' failed with diagnostics: > unable to load shared object > '/home/biocbuild/bbs-3.18-bioc/R/site-library/sf/libs/sf.so': > libgdal.so.30: cannot open shared object file: No such file or directory > --- failed re-building ‘scaleSim_vignette.Rmd’ > > SUMMARY: processing the following file failed: > ‘scaleSim_vignette.Rmd’ > > Error: Vignette re-building failed. > Execution halted > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
