Hi Robert, There's the possibility that some of these BAM files got corrupted when downloaded to kunpeng2 local cache.
@Martin Gregorov: Would you be able to try to run the following on kunpeng2? library(Rsamtools) library(ExperimentHub) eh <- ExperimentHub() quickBamFlagSummary(eh[["EH8081"]]) If you get an error that the file cannot be opened, then maybe try to re-download it with: eh[["EH8081", force=TRUE]] Then try quickBamFlagSummary(eh[["EH8081"]]) again and hopefully it will work. Thanks, H. On 10/23/23 08:03, Robert Castelo wrote: > hi, > > our package atena fails to build **only** in kunpeng2 Linux openEuler > 22.03 LTS-SP1 / aarch64: > > https://bioconductor.org/checkResults/3.18/bioc-LATEST/gDNAx/kunpeng2-buildsrc.html > > > > concretely, the vignette fails to find a BAM file downloaded via > ExperimentHub. This does not happen in any of the other platforms. > Should we do anything about this? > > Thanks! > > robert. > -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
