Hi Robert, thanks for taking an interest in my problem! I've been
unwell, and could not respond sooner. I can't put an __init__.py file
in the top-level /site-packages directory as far as I am aware, and
I'm not sure that would be a sensible thing to do to my users...

I think my original email specifies the problem clearly:

I have a package I would like to distribute, that Sage users can
install using distutils, and I want to be able to import a
Cython-generated extension without it polluting the global namespace.

I suspect this is nothing to do with Cython, or Sage, but to do with
Python or disutils, but I am not sure... If someone could at least
clarify what area this problem fits into that would be a great help
because I can then go to the appropriate forums. Thanks,

Emil

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