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Rui Barradas

Às 04:33 de 11/04/20, Anand Menon escreveu:
Hello, Could you please help unsubscribe me from these emails. Thank you.

Kind Regards,
Anand K Menon
Cell: 1-416-939-3671


On Fri, Apr 10, 2020 at 3:46 PM Ana Marija <sokovic.anamar...@gmail.com>
wrote:

Hello,

I would like to try this example in this link:

https://www.rdocumentation.org/packages/SNPRelate/versions/1.6.4/topics/snpgdsBED2GDS

for example this line:

bed.fn <- system.file("extdata", "plinkhapmap.bed.gz", package="SNPRelate")

I have in current directory from where I would run this function a
file named output4.bed

in order to run the above, can I just run this:
bed.fn <- system.file("output4.bed", package="SNPRelate")

what is "extdata" ? Do I need it if my output4.bed is in the directory
from where I am running this?

Also do I need to have .gz format of output4.bed?

Thanks
Ana

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