On 10/04/2020 3:46 p.m., Ana Marija wrote:
Hello,
I would like to try this example in this link:
https://www.rdocumentation.org/packages/SNPRelate/versions/1.6.4/topics/snpgdsBED2GDS
for example this line:
bed.fn <- system.file("extdata", "plinkhapmap.bed.gz", package="SNPRelate")
I have in current directory from where I would run this function a
file named output4.bed
Just use "output4.bed" as the filename. The system.file() function is
for working out the filename of files installed in packages.
Duncan Murdoch
in order to run the above, can I just run this:
bed.fn <- system.file("output4.bed", package="SNPRelate")
what is "extdata" ? Do I need it if my output4.bed is in the directory
from where I am running this?
Also do I need to have .gz format of output4.bed?
Thanks
Ana
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