Got it, thanks! On Fri, Apr 10, 2020 at 2:54 PM Duncan Murdoch <murdoch.dun...@gmail.com> wrote: > > On 10/04/2020 3:46 p.m., Ana Marija wrote: > > Hello, > > > > I would like to try this example in this link: > > https://www.rdocumentation.org/packages/SNPRelate/versions/1.6.4/topics/snpgdsBED2GDS > > > > for example this line: > > > > bed.fn <- system.file("extdata", "plinkhapmap.bed.gz", package="SNPRelate") > > > > I have in current directory from where I would run this function a > > file named output4.bed > > Just use "output4.bed" as the filename. The system.file() function is > for working out the filename of files installed in packages. > > Duncan Murdoch > > > > > in order to run the above, can I just run this: > > bed.fn <- system.file("output4.bed", package="SNPRelate") > > > > what is "extdata" ? Do I need it if my output4.bed is in the directory > > from where I am running this? > > > > Also do I need to have .gz format of output4.bed? > > > > Thanks > > Ana > > > > ______________________________________________ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > >
______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
