Hello,
I would like to try this example in this link:
https://www.rdocumentation.org/packages/SNPRelate/versions/1.6.4/topics/snpgdsBED2GDS
for example this line:
bed.fn <- system.file("extdata", "plinkhapmap.bed.gz", package="SNPRelate")
I have in current directory from where I would run this function a
file named output4.bed
in order to run the above, can I just run this:
bed.fn <- system.file("output4.bed", package="SNPRelate")
what is "extdata" ? Do I need it if my output4.bed is in the directory
from where I am running this?
Also do I need to have .gz format of output4.bed?
Thanks
Ana
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