On Nov 21, 2012, at 11:36 AM, Ricardo Román Brenes <rro...@cenat.ac.cr> wrote:
> i've followed that guide already to no success That installation guide shows the installation taking place from the CLI outside of R, using R CMD INSTALL ..., not using install.packages() from within an R session, which is what you are showing below. If you have tried that and failed, then I would recommend contacting the package maintainer for assistance or perhaps posting to R-SIG-HPC: https://stat.ethz.ch/mailman/listinfo/r-sig-hpc Marc > > On Wed, Nov 21, 2012 at 11:34 AM, Marc Schwartz <marc_schwa...@me.com> wrote: > > On Nov 21, 2012, at 10:40 AM, Ricardo Román Brenes <rro...@cenat.ac.cr> wrote: > > > Hello everyone > > > > im trying to install Rmpi library on centos 6. I have already installed > > mpich2 1.4 > > > > [root@localhost ~]# R --version > >> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > >> Copyright (C) 2012 The R Foundation for Statistical Computing > >> ISBN 3-900051-07-0 > >> Platform: x86_64-redhat-linux-gnu (64-bit) > > > > > > > > [root@localhost ~]# mpich2version > >> MPICH2 Version: 1.4.1p1 > >> MPICH2 Release date: Thu Sep 1 13:53:02 CDT 2011 > >> MPICH2 Device: ch3:nemesis > >> MPICH2 configure: > >> MPICH2 CC: gcc -O2 > >> MPICH2 CXX: c++ -O2 > >> MPICH2 F77: gfortran -O2 > >> MPICH2 FC: f95 -O2 > > > > > > > > > > when i issue the install order i get this output: > > > > > >> install.packages("Rmpi") > >> Installing package(s) into /usr/lib64/R/library > >> (as lib is unspecified) > >> trying URL 'http://cran.rstudio.com/src/contrib/Rmpi_0.6-1.tar.gz' > >> Content type 'application/x-gzip' length 92977 bytes (90 Kb) > >> opened URL > >> ================================================== > >> downloaded 90 Kb > >> * installing *source* package Rmpi ... > >> ** package Rmpi successfully unpacked and MD5 sums checked > >> checking for gcc... gcc -m64 -std=gnu99 > >> checking whether the C compiler works... yes > >> checking for C compiler default output file name... a.out > >> checking for suffix of executables... > >> checking whether we are cross compiling... no > >> checking for suffix of object files... o > >> checking whether we are using the GNU C compiler... yes > >> checking whether gcc -m64 -std=gnu99 accepts -g... yes > >> checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed > >> I am here /usr/local and it is OpenMPI > >> Trying to find mpi.h ... > >> Found in /usr/local/include > >> Trying to find libmpi.so or libmpich.a ... > >> checking for main in -lmpi... no > >> libmpi not found. exiting... > >> ERROR: configuration failed for package Rmpi > >> * removing /usr/lib64/R/library/Rmpi > >> The downloaded source packages are in > >> /tmp/RtmpBvTTqc/downloaded_packages > >> Updating HTML index of packages in '.Library' > >> Making packages.html ... done > >> Warning message: > >> In install.packages("Rmpi") : > >> installation of package Rmpi had non-zero exit status > > > > > > > > I have tried with different configure.args but the result is the same, i > > cant seem to install it... > > > > Is there someone who has been through the same problem? or that knows a > > guide i can follow or something? > > > > Thanks in advance > > > > Ricardo > > > There is a page here: > > http://www.stats.uwo.ca/faculty/yu/Rmpi/ > > which is linked from the CRAN page for the package. On the above page, there > is an Installation for Linux link, which is likely to be helpful. > > Regards, > > Marc Schwartz > > [[alternative HTML version deleted]]
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