On Nov 21, 2012, at 10:40 AM, Ricardo Román Brenes <rro...@cenat.ac.cr> wrote:
> Hello everyone
>
> im trying to install Rmpi library on centos 6. I have already installed
> mpich2 1.4
>
> [root@localhost ~]# R --version
>> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
>> Copyright (C) 2012 The R Foundation for Statistical Computing
>> ISBN 3-900051-07-0
>> Platform: x86_64-redhat-linux-gnu (64-bit)
>
>
>
> [root@localhost ~]# mpich2version
>> MPICH2 Version: 1.4.1p1
>> MPICH2 Release date: Thu Sep 1 13:53:02 CDT 2011
>> MPICH2 Device: ch3:nemesis
>> MPICH2 configure:
>> MPICH2 CC: gcc -O2
>> MPICH2 CXX: c++ -O2
>> MPICH2 F77: gfortran -O2
>> MPICH2 FC: f95 -O2
>
>
>
>
> when i issue the install order i get this output:
>
>
>> install.packages("Rmpi")
>> Installing package(s) into ‘/usr/lib64/R/library’
>> (as ‘lib’ is unspecified)
>> trying URL 'http://cran.rstudio.com/src/contrib/Rmpi_0.6-1.tar.gz'
>> Content type 'application/x-gzip' length 92977 bytes (90 Kb)
>> opened URL
>> ==================================================
>> downloaded 90 Kb
>> * installing *source* package ‘Rmpi’ ...
>> ** package ‘Rmpi’ successfully unpacked and MD5 sums checked
>> checking for gcc... gcc -m64 -std=gnu99
>> checking whether the C compiler works... yes
>> checking for C compiler default output file name... a.out
>> checking for suffix of executables...
>> checking whether we are cross compiling... no
>> checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether gcc -m64 -std=gnu99 accepts -g... yes
>> checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed
>> I am here /usr/local and it is OpenMPI
>> Trying to find mpi.h ...
>> Found in /usr/local/include
>> Trying to find libmpi.so or libmpich.a ...
>> checking for main in -lmpi... no
>> libmpi not found. exiting...
>> ERROR: configuration failed for package ‘Rmpi’
>> * removing ‘/usr/lib64/R/library/Rmpi’
>> The downloaded source packages are in
>> ‘/tmp/RtmpBvTTqc/downloaded_packages’
>> Updating HTML index of packages in '.Library'
>> Making packages.html ... done
>> Warning message:
>> In install.packages("Rmpi") :
>> installation of package ‘Rmpi’ had non-zero exit status
>
>
>
> I have tried with different configure.args but the result is the same, i
> cant seem to install it...
>
> Is there someone who has been through the same problem? or that knows a
> guide i can follow or something?
>
> Thanks in advance
>
> Ricardo
There is a page here:
http://www.stats.uwo.ca/faculty/yu/Rmpi/
which is linked from the CRAN page for the package. On the above page, there is
an Installation for Linux link, which is likely to be helpful.
Regards,
Marc Schwartz
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