i've followed that guide already to no success
On Wed, Nov 21, 2012 at 11:34 AM, Marc Schwartz <marc_schwa...@me.com>wrote:
>
> On Nov 21, 2012, at 10:40 AM, Ricardo Román Brenes <rro...@cenat.ac.cr>
> wrote:
>
> > Hello everyone
> >
> > im trying to install Rmpi library on centos 6. I have already installed
> > mpich2 1.4
> >
> > [root@localhost ~]# R --version
> >> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
> >> Copyright (C) 2012 The R Foundation for Statistical Computing
> >> ISBN 3-900051-07-0
> >> Platform: x86_64-redhat-linux-gnu (64-bit)
> >
> >
> >
> > [root@localhost ~]# mpich2version
> >> MPICH2 Version: 1.4.1p1
> >> MPICH2 Release date: Thu Sep 1 13:53:02 CDT 2011
> >> MPICH2 Device: ch3:nemesis
> >> MPICH2 configure:
> >> MPICH2 CC: gcc -O2
> >> MPICH2 CXX: c++ -O2
> >> MPICH2 F77: gfortran -O2
> >> MPICH2 FC: f95 -O2
> >
> >
> >
> >
> > when i issue the install order i get this output:
> >
> >
> >> install.packages("Rmpi")
> >> Installing package(s) into /usr/lib64/R/library
> >> (as lib is unspecified)
> >> trying URL 'http://cran.rstudio.com/src/contrib/Rmpi_0.6-1.tar.gz'
> >> Content type 'application/x-gzip' length 92977 bytes (90 Kb)
> >> opened URL
> >> ==================================================
> >> downloaded 90 Kb
> >> * installing *source* package Rmpi ...
> >> ** package Rmpi successfully unpacked and MD5 sums checked
> >> checking for gcc... gcc -m64 -std=gnu99
> >> checking whether the C compiler works... yes
> >> checking for C compiler default output file name... a.out
> >> checking for suffix of executables...
> >> checking whether we are cross compiling... no
> >> checking for suffix of object files... o
> >> checking whether we are using the GNU C compiler... yes
> >> checking whether gcc -m64 -std=gnu99 accepts -g... yes
> >> checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed
> >> I am here /usr/local and it is OpenMPI
> >> Trying to find mpi.h ...
> >> Found in /usr/local/include
> >> Trying to find libmpi.so or libmpich.a ...
> >> checking for main in -lmpi... no
> >> libmpi not found. exiting...
> >> ERROR: configuration failed for package Rmpi
> >> * removing /usr/lib64/R/library/Rmpi
> >> The downloaded source packages are in
> >> /tmp/RtmpBvTTqc/downloaded_packages
> >> Updating HTML index of packages in '.Library'
> >> Making packages.html ... done
> >> Warning message:
> >> In install.packages("Rmpi") :
> >> installation of package Rmpi had non-zero exit status
> >
> >
> >
> > I have tried with different configure.args but the result is the same, i
> > cant seem to install it...
> >
> > Is there someone who has been through the same problem? or that knows a
> > guide i can follow or something?
> >
> > Thanks in advance
> >
> > Ricardo
>
>
> There is a page here:
>
> http://www.stats.uwo.ca/faculty/yu/Rmpi/
>
> which is linked from the CRAN page for the package. On the above page,
> there is an Installation for Linux link, which is likely to be helpful.
>
> Regards,
>
> Marc Schwartz
>
>
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