Hello everyone
im trying to install Rmpi library on centos 6. I have already installed
mpich2 1.4
[root@localhost ~]# R --version
> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
> Copyright (C) 2012 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
> Platform: x86_64-redhat-linux-gnu (64-bit)
[root@localhost ~]# mpich2version
> MPICH2 Version: 1.4.1p1
> MPICH2 Release date: Thu Sep 1 13:53:02 CDT 2011
> MPICH2 Device: ch3:nemesis
> MPICH2 configure:
> MPICH2 CC: gcc -O2
> MPICH2 CXX: c++ -O2
> MPICH2 F77: gfortran -O2
> MPICH2 FC: f95 -O2
when i issue the install order i get this output:
> install.packages("Rmpi")
> Installing package(s) into /usr/lib64/R/library
> (as lib is unspecified)
> trying URL 'http://cran.rstudio.com/src/contrib/Rmpi_0.6-1.tar.gz'
> Content type 'application/x-gzip' length 92977 bytes (90 Kb)
> opened URL
> ==================================================
> downloaded 90 Kb
> * installing *source* package Rmpi ...
> ** package Rmpi successfully unpacked and MD5 sums checked
> checking for gcc... gcc -m64 -std=gnu99
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc -m64 -std=gnu99 accepts -g... yes
> checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed
> I am here /usr/local and it is OpenMPI
> Trying to find mpi.h ...
> Found in /usr/local/include
> Trying to find libmpi.so or libmpich.a ...
> checking for main in -lmpi... no
> libmpi not found. exiting...
> ERROR: configuration failed for package Rmpi
> * removing /usr/lib64/R/library/Rmpi
> The downloaded source packages are in
> /tmp/RtmpBvTTqc/downloaded_packages
> Updating HTML index of packages in '.Library'
> Making packages.html ... done
> Warning message:
> In install.packages("Rmpi") :
> installation of package Rmpi had non-zero exit status
I have tried with different configure.args but the result is the same, i
cant seem to install it...
Is there someone who has been through the same problem? or that knows a
guide i can follow or something?
Thanks in advance
Ricardo
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
