Hi Leila,
Both methods works for me. You are using a really old PyMOL version. I
don't know if that is the problem but I think you should upgrade PyMOL.
Osvaldo
PS: Please use the reply button, to keep the whole conversation on the same
thread.
On Tue, Jul 14, 2015 at 10:49 AM, leila karami <karami.lei...@gmail.com>
wrote:
I am sure that I am in working directory. To prevent this mistake, I
selected desktop as working directory. (I put out.pdbqt and pr.pdb files in
desktop and then load them).
I am using pymol-0_99rc6-bin-win32 on windows 7.
My input files are as follows:
https://www.dropbox.com/s/hx94orra4pumx82/out.pdbqt?dl=0
https://www.dropbox.com/s/2d09zkoqguwjujc/pr.pdb?dl=0
Please guide me to solve this problem.
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On Tue, Jul 14, 2015 at 10:38 AM, Osvaldo Martin <aloctavo...@gmail.com>
wrote:
> Both methods work for me. Are you sure you are opening the correct
> obj3.pdb file? Maybe you are saving the obj3.pdb file to a different
> directory and opening an old obj3 file.
>
> Wich PyMOL version are you using and on which operating system?
>
>
> On Tue, Jul 14, 2015 at 10:25 AM, leila karami <karami.lei...@gmail.com>
> wrote:
>
>> Dear Osvaldo,
>>
>> I used 2 following ways:
>>
>> 1)
>> load out.pdbqt,obj1
>> load pr.pdb, obj2
>> split_states obj1
>> create obj3, (obj1_0001, obj2)
>> save obj3.pdb, obj3
>>
>> 2)
>> load out.pdbqt,obj1
>> load pr.pdb, obj2
>> split_states obj1
>> save obj3.pdb, (obj1_0001, obj2)
>>
>> Unfortunately, in both cases, when I open obj3.pdb file using the text
>> editor, there as only END word.
>>
>>
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>
>
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