Dear Leila,
What OS are jou using ? If it is windows you may try the for windows
modified PyMol plugin de Daniel Seeliger from our web site
(http://eipl.cnrs-mrs.fr/bioinformatic.php), which allows to create a
poses.pdb file usable in PyMol and its measurements wizard.
best regards
Goetz
Le 13/07/2015 08:58, leila karami a écrit :
Dear PyMOL users,
I am visualizing autodock vina results using PyMOL:
I open out.pdbqt (containing 9 docked conformations of ligand)
I open pr.pdb (containing protein structure)
I want to have 1 pdb file containing one of conformations of ligand
(for example number 1 which is the best pose) + protein structure. To
this, I used File, Save molecule,
a new window was opened: Which object or selection would you like to save?
out.pdbqt
pr.pdb
How to select both of them?
Any help will highly appreciated?
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Goetz Parsiegla, PhD, Maître de Conférences Aix-Marseille Université (AMU)
Research :
Laboratory of Enzymology at Interfaces and Physiology of Lipolysis (EIPL)
UMR 7282 CNRS et Aix-Marseille Université - Director : Frédéric Carrière
31 Chemin Joseph-Aiguier
F-13402 MARSEILLE cedex 20, France
tel: 33 (0)4 91 16 41 92 - fax: 33 (0)4 91 71 58 57
Teaching :
Polytech Marseille Departement of Biological Engineering
Case 925 -Campus de Luminy
163, Avenue de Luminy
13288 Marseille CEDEX 09
FRANCE
Email: goetz.parsie...@imm.cnrs.fr
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