Dear Leila,
What you want is the create <http://www.pymolwiki.org/index.php/Create>
command, you should write something like:
create new_object, (pose1, protein)
Cheers,
Osvaldo.
On Mon, Jul 13, 2015 at 3:58 AM, leila karami <karami.lei...@gmail.com>
wrote:
Dear PyMOL users,
>
> I am visualizing autodock vina results using PyMOL:
>
> I open out.pdbqt (containing 9 docked conformations of ligand)
> I open pr.pdb (containing protein structure)
>
> I want to have 1 pdb file containing one of conformations of ligand (for
> example number 1 which is the best pose) + protein structure. To this, I
> used File, Save molecule,
>
> a new window was opened: Which object or selection would you like to save?
>
> out.pdbqt
> pr.pdb
>
> How to select both of them?
>
> Any help will highly appreciated?
>
>
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