Both methods work for me. Are you sure you are opening the correct obj3.pdb
file? Maybe you are saving the obj3.pdb file to a different directory and
opening an old obj3 file.
Wich PyMOL version are you using and on which operating system?
On Tue, Jul 14, 2015 at 10:25 AM, leila karami <karami.lei...@gmail.com>
wrote:
> Dear Osvaldo,
>
> I used 2 following ways:
>
> 1)
> load out.pdbqt,obj1
> load pr.pdb, obj2
> split_states obj1
> create obj3, (obj1_0001, obj2)
> save obj3.pdb, obj3
>
> 2)
> load out.pdbqt,obj1
> load pr.pdb, obj2
> split_states obj1
> save obj3.pdb, (obj1_0001, obj2)
>
> Unfortunately, in both cases, when I open obj3.pdb file using the text
> editor, there as only END word.
>
>
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