On Sat, 11 Jul 2015, Rich Shepard wrote:

 As I wrote above, each gray box with "Chunk n" inside has a unique number
visible. I see this unnamed-chunk as the name for the first figure. It's
in the /figure subdirectory as unnamed-chunk-7.1.pdf Because that figure
is in what LyX shows as Chunk 8 I have no idea where knitr comes up with
unnamed.

  It turns out that the unnamed-chunks were remnants left after I epxlicity
named the chunks. Deleting the unnamed ones did not affect the document
becaues it is the named chunks that are used.

Thanks for all the guidance,

Rich

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