Hi,I forgot to mention that the AE fonts are deprecated now; the Latin Modern fonts do everything they did and more. In fact, the LM fonts are much better than the CM fonts, too.
I would highly recommend deprecating both AE & CM in favour of the LM fonts. They all look the same, although some kerning is different, but LM covers a vast number of characters over the other two families.
Aside from exact backwards compatibility, there's no reason to keep AE & CM at all :) Oh, unless, again, a user is using an old LaTeX distribution but a new version of LyX...
Will
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