If that is a volume label, then you will have to sample it on the
surface, eg, with mri_vol2surf. This will create a segmentation on the
surface (not a label). You can use vol2surf to map it all the way to
fsaverage, or you can map it on the native surface then use
mris_apply_reg or mri_surf2surf. Once you get it into the space you
want, you can convert to a label using mri_cor2label using the surface
option.
On 9/27/2023 2:28 PM, Huang, Yujing wrote:
External Email - Use Caution
Hi Sam,
I believe you can do it using mri_label2label - *MailScanner has
detected a possible fraud attempt from "secure-web.cisco.com" claiming
to be* https://surfer.nmr.mgh.harvard.edu/fswiki/mri_label2label
<https://secure-web.cisco.com/1ta5FXt-47cs-ifnivYFc-YPcBadRBDtrkUjzHts4QQKKOe__yyoSbndOm3lk7ab6xYwPhihssBHPqfgWQA6AfzvmqNJv53sTQvh4dv_m9eFIXsTK9fe7Ym_CLufZTcoblBZQvRbKV0-y2Py55YEtVx-Z7-wZ-7lco07Z3LUxnev5cgN8IHhbdTV5w6vKEY5_XpmKVGLVh44MjpGsJ6Cax8skoeJiOpbEZur1AqHHONCllZcLkva2kEupEgXLFhAu/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fmri_label2label>
Best,
Yujing
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Sam W
*Sent:* Wednesday, September 27, 2023 12:26 PM
*To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] convert to fsaverage
* External Email - Use Caution *
Hello!
I have a volumetric mask of the cuneus and I would like to convert it
to a label and then convert that label to fsaverage space.
So far I did mri_vol2label --i cuneus.nii.gz --l cuneus.label
But how can I now convert cuneus.label to fsaverage?
Thanks!
Best regards,
Sam
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