External Email - Use Caution Dear Akila, The error stems from trying to write the outpus of –qc and –vol to the same CSV file. We’ll add a check to the code to make sure that an error is thrown if both files are the same. Cheers, /Eugenio
-- Juan Eugenio Iglesias http://secure-web.cisco.com/18K-dhyKjWQHzNnB3upfQmeJOz7_T0qpyO0pL5GkJkZ95SH7VVG8tAHFC55Coaw3h1zDxgGsgBNsUguTD-QaiCl75aeJ7RwHQdHlzJTzR3O3fMVNuVsEb9AZd5M_XzhnmcVlxoCSZX45NCuQ2ckmLGqcbYvg1ikxxaOw9uXs1rj5ohofFj3KUUHBXw5ssPnHl6nMchtppl7ghjboo9JvFdHUCRzxdmQ_zwB0miHEqLnj3bkVlA-vQ418GU5qqFP6Q/http%3A%2F%2Fwww.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Weerasekera, Akila,PHD <aweerasek...@mgh.harvard.edu> Date: Tuesday, October 3, 2023 at 6:21 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] SynthSeg volume labels External Email - Use Caution Thanks Eugenio! csv attached... I source: [cid:b84edda1-fcdd-48fc-8432-335703b04b75] best, Akila Akila Weerasekera, PhD | Postdoctoral Research Fellow Maria Mody lab for Developmental Language and Reading Research Laboratory | Eva Ratai Lab for Clinical Spectroscopy | Garry Nolan Lab (Stanford University) | Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA Mobile: (781) 820 4501 aweerasek...@mgh.harvard.edu <mailto:aweerasek...@mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1ZTXa0CRjaQIGS5HEEfXjtDdG25e7aY5rd6dX9jhZJ2dUTwwdceucseMI0PSzApS4SkjI3_SmuRU1zT0xELQqF86Oaz2lYzHHdHqu8ncvyxLugdcidITVwaU1_p8p3ydb992PAQUbtdii1F_AQ84ngb7PA7_gZePO1hRskWyjJOIA77J4HBTA2INTII6Mvm7QnDP6ehOz8WZk20_K5ffxaLecb_6JJiRqCzhl2m4XoJWClD8Q0HkUy6GGWaAkrFxUr1LZMN4zfhiQBbIxZ40x1w/http%3A%2F%2Fwww.nmr.mgh.harvard.edu<http://secure-web.cisco.com/1zyRKNZEwBEeu5aBS1igKt5TjwAkp423Sx__wJFJMUWvujY5ep86DH-txqpB5HyvuZ1EWI8icknsrOwEEXYzY1AI1nR8_81eyRQeRNQRjRMsgKBMkJVi-J0zDndaLI2AiQmb21OMgdyFnVvJcw6X7Ml_qF7tz2TrJSs1aU7lz-IZ3cRqEChxVdRYzpb7wrnspeDhM87awQ9x2PCCwPFBNjOQC7A7asMJxQITuUBtYUV2dcGpijGlcGn5hOBCbn1us6tTO82Xy4OvfYzhpHUN3qg/http%3A%2F%2Fwww.nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1LB2CW_cejC0m-CCMob6o1AAO3b57utVtNu3y8jSB-7HpxyBy64hfHtu9rCh2HgRYPmf2YWv7V3zfMQ_pZEGhEW1YnrDMxBqhLzrBZGbejxxWqduRbzH6JSm0YK8GXvBt8Cr2UQzADSx3XGS0MYXKrhOjyltneTPe663yU4zKU56BJqOCIYE3JXJA8nEjo9_oj4eLjqXVGqrwoKo3zMtEAlaBcVAfntOZltkvHgfT2glk9FGmpBtXeMwAON35dRdOQ4lTjWauKx_hiEG-W8wTqQ/https%3A%2F%2Fscholar.harvard.edu%2Floggia<https://secure-web.cisco.com/1rv3wX-dfKawMQP5NwtEhO1S8-ZkxDO-nMBCiy5CfDDBfrH725YdvPT9odXWSDhXax_tkxVXxRTasCwoqCgc3nQdCT1pcyLsexwpgyDO7tVzan-z8tI_XaEW3c9vwnA5Nmp1bMZVC-27UwYnbdAhTbG1HmUVCoiL4F79y7p-dHEDNIrSA3zztB2YdS9tWBu3hfAZ8L79ozK7D5glQRz7V9mSuGGQM_v50IVOROy_3mjW9g0T5UOCb0RI2E9CYAJPJgDuCjLKOCEBQpCSEDa4xKQ/https%3A%2F%2Fscholar.harvard.edu%2Floggia> ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Juan E. <jiglesiasgonza...@mgh.harvard.edu> Sent: Tuesday, October 3, 2023 8:52 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] SynthSeg volume labels External Email - Use Caution Thanks, this is super weird. When did you download this dev version? Also: would it be possible to share the CSV file, please? Cheers, /Eugenio -- Juan Eugenio Iglesias http://secure-web.cisco.com/18K-dhyKjWQHzNnB3upfQmeJOz7_T0qpyO0pL5GkJkZ95SH7VVG8tAHFC55Coaw3h1zDxgGsgBNsUguTD-QaiCl75aeJ7RwHQdHlzJTzR3O3fMVNuVsEb9AZd5M_XzhnmcVlxoCSZX45NCuQ2ckmLGqcbYvg1ikxxaOw9uXs1rj5ohofFj3KUUHBXw5ssPnHl6nMchtppl7ghjboo9JvFdHUCRzxdmQ_zwB0miHEqLnj3bkVlA-vQ418GU5qqFP6Q/http%3A%2F%2Fwww.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Weerasekera, Akila,PHD <aweerasek...@mgh.harvard.edu> Date: Tuesday, October 3, 2023 at 7:01 AM To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] SynthSeg volume labels External Email - Use Caution Hi, Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command? [cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac] Thank you, Akila Akila Weerasekera, PhD | Postdoctoral Research Fellow Maria Mody lab for Developmental Language and Reading Research Laboratory | Eva Ratai Lab for Clinical Spectroscopy | Garry Nolan Lab (Stanford University) | Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA Mobile: (781) 820 4501 aweerasek...@mgh.harvard.edu <mailto:aweerasek...@mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1ZTXa0CRjaQIGS5HEEfXjtDdG25e7aY5rd6dX9jhZJ2dUTwwdceucseMI0PSzApS4SkjI3_SmuRU1zT0xELQqF86Oaz2lYzHHdHqu8ncvyxLugdcidITVwaU1_p8p3ydb992PAQUbtdii1F_AQ84ngb7PA7_gZePO1hRskWyjJOIA77J4HBTA2INTII6Mvm7QnDP6ehOz8WZk20_K5ffxaLecb_6JJiRqCzhl2m4XoJWClD8Q0HkUy6GGWaAkrFxUr1LZMN4zfhiQBbIxZ40x1w/http%3A%2F%2Fwww.nmr.mgh.harvard.edu<http://secure-web.cisco.com/1pRNH3jpPVm0xhHznjcAnuOO_FSI27YNJi0tVFuibJuCEyIKNvOjS0zxfYeZls6-N7to8HDwdFMusD4APrNUD8cvTJ7AsP1bgvHK1YSv_6Zx7fb4h0I8DGwhrHCqTJlItXEQO7ZXSn-Mw4sUw8O1WGTftROYvJfo_vGFIm5jkuF30CzN5E8F7XR-oTOCoKroJbCi15yJOPDL1e5YfsN4iFvegtZaC6slEXCeLnufNogDUhSL6xB-VIH2TFkdS3wBWqRbCNxDy0ZfXi7VUtbnK5A/http%3A%2F%2Fwww.nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1LB2CW_cejC0m-CCMob6o1AAO3b57utVtNu3y8jSB-7HpxyBy64hfHtu9rCh2HgRYPmf2YWv7V3zfMQ_pZEGhEW1YnrDMxBqhLzrBZGbejxxWqduRbzH6JSm0YK8GXvBt8Cr2UQzADSx3XGS0MYXKrhOjyltneTPe663yU4zKU56BJqOCIYE3JXJA8nEjo9_oj4eLjqXVGqrwoKo3zMtEAlaBcVAfntOZltkvHgfT2glk9FGmpBtXeMwAON35dRdOQ4lTjWauKx_hiEG-W8wTqQ/https%3A%2F%2Fscholar.harvard.edu%2Floggia<https://secure-web.cisco.com/158m2Mk7xVvNTOqu1Onlo3GW-mrGUVQUQR1Nxh5mCc2yTrzFJfeJGkNshODQrS36NgBynIuAA76OgoFOTjIUGhTlGSBWXiGvrE68JpeACJGSTxG4JLCmzavubGu7m2XldRNVEhEGQfEQTmYFa7YXKTW5pPOXwCyvGkUSQHJY96FroS0Gv6dbOdeFCsY_De4jBK7e38wGoFInumKa6TVleyV1-bB0bNzFOZsT2LPG2mhBDtwOKA2YIyJ1hIj66SaZkAIk2zmMDITjERtwUmoixMA/https%3A%2F%2Fscholar.harvard.edu%2Floggia>
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