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Thanks for sharing the CSV Akila. Could you also share what command you used to
generate this CSV and the corresponding terminal output please?
I was not able to recreate this error on my end.
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Weerasekera, Akila,PHD
<aweerasek...@mgh.harvard.edu>
Sent: Tuesday, October 3, 2023 9:20 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] SynthSeg volume labels
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Thanks Eugenio! csv attached...
I source:
[cid:b84edda1-fcdd-48fc-8432-335703b04b75]
best,
Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging |
Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown,
MA 02129, USA
Mobile: (781) 820 4501
aweerasek...@mgh.harvard.edu <mailto:aweerasek...@mgh.harvard.edu>
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From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Juan
E. <jiglesiasgonza...@mgh.harvard.edu>
Sent: Tuesday, October 3, 2023 8:52 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] SynthSeg volume labels
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Thanks, this is super weird. When did you download this dev version? Also:
would it be possible to share the CSV file, please?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://secure-web.cisco.com/1a9ooA029rV8bRkgoeKJz6ads4zlv0aAVSJ-wq5c5p9E1h4xuBwWFJ_6ahj1prQExzJBzkrbw64_NKHq34n7hliPLWgrPNIRxRhegB5Nf_cpNlZFfVlC-XyRKQkA9HQSfPxkMT1EDvonWK-7OIpkiG9JUiv4ED_qgxnzO8YbBKuG72fLI470EzfrTGhon1q07ovMaC-y0xurSrfvida8G2RIIvYi_LhIZDDJzxr-CJERsr7vV_HEauQ4ndOOQKebw/http%3A%2F%2Fwww.jeiglesias.com
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Weerasekera, Akila,PHD
<aweerasek...@mgh.harvard.edu>
Date: Tuesday, October 3, 2023 at 7:01 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] SynthSeg volume labels
External Email - Use Caution
Hi,
Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all
volume labels, do I need to include anything else in the command?
[cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac]
Thank you,
Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging |
Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown,
MA 02129, USA
Mobile: (781) 820 4501
aweerasek...@mgh.harvard.edu <mailto:aweerasek...@mgh.harvard.edu>
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