External Email - Use Caution Thanks Eugenio! csv attached...
I source: [cid:b84edda1-fcdd-48fc-8432-335703b04b75] best, Akila Akila Weerasekera, PhD | Postdoctoral Research Fellow Maria Mody lab for Developmental Language and Reading Research Laboratory | Eva Ratai Lab for Clinical Spectroscopy | Garry Nolan Lab (Stanford University) | Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA Mobile: (781) 820 4501 aweerasek...@mgh.harvard.edu <mailto:aweerasek...@mgh.harvard.edu> http://secure-web.cisco.com/1zyRKNZEwBEeu5aBS1igKt5TjwAkp423Sx__wJFJMUWvujY5ep86DH-txqpB5HyvuZ1EWI8icknsrOwEEXYzY1AI1nR8_81eyRQeRNQRjRMsgKBMkJVi-J0zDndaLI2AiQmb21OMgdyFnVvJcw6X7Ml_qF7tz2TrJSs1aU7lz-IZ3cRqEChxVdRYzpb7wrnspeDhM87awQ9x2PCCwPFBNjOQC7A7asMJxQITuUBtYUV2dcGpijGlcGn5hOBCbn1us6tTO82Xy4OvfYzhpHUN3qg/http%3A%2F%2Fwww.nmr.mgh.harvard.edu<http://secure-web.cisco.com/1zyRKNZEwBEeu5aBS1igKt5TjwAkp423Sx__wJFJMUWvujY5ep86DH-txqpB5HyvuZ1EWI8icknsrOwEEXYzY1AI1nR8_81eyRQeRNQRjRMsgKBMkJVi-J0zDndaLI2AiQmb21OMgdyFnVvJcw6X7Ml_qF7tz2TrJSs1aU7lz-IZ3cRqEChxVdRYzpb7wrnspeDhM87awQ9x2PCCwPFBNjOQC7A7asMJxQITuUBtYUV2dcGpijGlcGn5hOBCbn1us6tTO82Xy4OvfYzhpHUN3qg/http%3A%2F%2Fwww.nmr.mgh.harvard.edu> https://secure-web.cisco.com/1rv3wX-dfKawMQP5NwtEhO1S8-ZkxDO-nMBCiy5CfDDBfrH725YdvPT9odXWSDhXax_tkxVXxRTasCwoqCgc3nQdCT1pcyLsexwpgyDO7tVzan-z8tI_XaEW3c9vwnA5Nmp1bMZVC-27UwYnbdAhTbG1HmUVCoiL4F79y7p-dHEDNIrSA3zztB2YdS9tWBu3hfAZ8L79ozK7D5glQRz7V9mSuGGQM_v50IVOROy_3mjW9g0T5UOCb0RI2E9CYAJPJgDuCjLKOCEBQpCSEDa4xKQ/https%3A%2F%2Fscholar.harvard.edu%2Floggia ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Juan E. <jiglesiasgonza...@mgh.harvard.edu> Sent: Tuesday, October 3, 2023 8:52 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] SynthSeg volume labels External Email - Use Caution Thanks, this is super weird. When did you download this dev version? Also: would it be possible to share the CSV file, please? Cheers, /Eugenio -- Juan Eugenio Iglesias http://secure-web.cisco.com/11Cxruc47BuRda-DyKFgS4NG_uqkV2S5IVN9NK8vCLnBzUY-cBInDR-yz7UMKYlqvOlNS7NnyTYL_WEX93RjECT9YbYaiig82kWeLmRhdkTFkf7mr8gO8qge7WHP1303V3BAf-MT_FUXwCToURxQWrCDA-sCf44L4l_zLaLTZdH_A0Izre1XRK-QykiysjbmTReRNktSJMmFZlq4gbtEpleshoF9ICc10fM_QF6LVdnqVse-xSTSFMzA_6tn5KhfI/http%3A%2F%2Fwww.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Weerasekera, Akila,PHD <aweerasek...@mgh.harvard.edu> Date: Tuesday, October 3, 2023 at 7:01 AM To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] SynthSeg volume labels External Email - Use Caution Hi, Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command? [cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac] Thank you, Akila Akila Weerasekera, PhD | Postdoctoral Research Fellow Maria Mody lab for Developmental Language and Reading Research Laboratory | Eva Ratai Lab for Clinical Spectroscopy | Garry Nolan Lab (Stanford University) | Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA Mobile: (781) 820 4501 aweerasek...@mgh.harvard.edu <mailto:aweerasek...@mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1zyRKNZEwBEeu5aBS1igKt5TjwAkp423Sx__wJFJMUWvujY5ep86DH-txqpB5HyvuZ1EWI8icknsrOwEEXYzY1AI1nR8_81eyRQeRNQRjRMsgKBMkJVi-J0zDndaLI2AiQmb21OMgdyFnVvJcw6X7Ml_qF7tz2TrJSs1aU7lz-IZ3cRqEChxVdRYzpb7wrnspeDhM87awQ9x2PCCwPFBNjOQC7A7asMJxQITuUBtYUV2dcGpijGlcGn5hOBCbn1us6tTO82Xy4OvfYzhpHUN3qg/http%3A%2F%2Fwww.nmr.mgh.harvard.edu<http://secure-web.cisco.com/1pRNH3jpPVm0xhHznjcAnuOO_FSI27YNJi0tVFuibJuCEyIKNvOjS0zxfYeZls6-N7to8HDwdFMusD4APrNUD8cvTJ7AsP1bgvHK1YSv_6Zx7fb4h0I8DGwhrHCqTJlItXEQO7ZXSn-Mw4sUw8O1WGTftROYvJfo_vGFIm5jkuF30CzN5E8F7XR-oTOCoKroJbCi15yJOPDL1e5YfsN4iFvegtZaC6slEXCeLnufNogDUhSL6xB-VIH2TFkdS3wBWqRbCNxDy0ZfXi7VUtbnK5A/http%3A%2F%2Fwww.nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1rv3wX-dfKawMQP5NwtEhO1S8-ZkxDO-nMBCiy5CfDDBfrH725YdvPT9odXWSDhXax_tkxVXxRTasCwoqCgc3nQdCT1pcyLsexwpgyDO7tVzan-z8tI_XaEW3c9vwnA5Nmp1bMZVC-27UwYnbdAhTbG1HmUVCoiL4F79y7p-dHEDNIrSA3zztB2YdS9tWBu3hfAZ8L79ozK7D5glQRz7V9mSuGGQM_v50IVOROy_3mjW9g0T5UOCb0RI2E9CYAJPJgDuCjLKOCEBQpCSEDa4xKQ/https%3A%2F%2Fscholar.harvard.edu%2Floggia<https://secure-web.cisco.com/158m2Mk7xVvNTOqu1Onlo3GW-mrGUVQUQR1Nxh5mCc2yTrzFJfeJGkNshODQrS36NgBynIuAA76OgoFOTjIUGhTlGSBWXiGvrE68JpeACJGSTxG4JLCmzavubGu7m2XldRNVEhEGQfEQTmYFa7YXKTW5pPOXwCyvGkUSQHJY96FroS0Gv6dbOdeFCsY_De4jBK7e38wGoFInumKa6TVleyV1-bB0bNzFOZsT2LPG2mhBDtwOKA2YIyJ1hIj66SaZkAIk2zmMDITjERtwUmoixMA/https%3A%2F%2Fscholar.harvard.edu%2Floggia>
subject,general white matter,general grey matter,general csf,cerebellum,brainstem,thalamus,putamen+pallidum,hippocampus+amygdala PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_11,1669308.4,239970.78,268476.97,13496.694,734.102,18996.352,56592.168,7902.474,3134.581,5479.42,1637.449,1262.694,1652.225,24126.164,4754.43,1933.334,387698.88,658.768,4412.924,238743.36,270168.38,10024.1,926.789,19270.98,57071.445,7636.626,3245.972,5033.584,1640.472,5390.432,1988.683,633.797,4613.352 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_11,0.8631,0.7649,0.8556,0.8843,0.8824,0.8919,0.8973,0.8757 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_1100,1663954.0,241952.58,262187.56,13099.763,778.138,20241.58,54489.465,8081.366,3166.338,5384.922,1600.18,1221.073,1633.863,24254.31,4647.402,1884.815,390131.2,643.395,4388.34,242518.39,264858.03,9760.291,1019.906,20460.092,55898.78,7644.42,3316.064,4937.132,1657.062,5101.366,1882.12,621.955,4491.98 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_1100,0.8657,0.7632,0.8534,0.8846,0.8817,0.8958,0.9003,0.8658 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_1101,1665830.4,241952.81,258327.97,12994.76,868.452,19572.924,55002.49,7560.43,3260.49,5161.106,1612.592,1444.234,1701.584,23790.93,4537.191,1968.458,404200.28,689.349,4585.84,240738.34,259986.92,9757.013,1012.237,19386.957,55747.06,7402.3,3330.132,5047.231,1701.697,5151.959,1952.326,717.831,4666.428 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_1101,0.8663,0.7641,0.8542,0.8837,0.8782,0.8908,0.9002,0.8751 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_1102,1668679.9,242445.88,261839.48,13438.895,801.766,19516.533,55388.37,7795.492,3132.231,5265.569,1557.19,1227.572,1684.691,23943.611,4592.338,1894.228,396968.56,689.064,4407.808,241143.75,264039.16,9975.921,981.51,19610.072,56432.21,7600.124,3265.37,4986.954,1604.893,5230.864,2004.358,661.321,4554.09 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_1102,0.8685,0.7682,0.8620,0.8851,0.8845,0.8946,0.8978,0.8766 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_400,1659477.8,243111.9,256531.25,12526.156,898.574,19745.521,53686.52,8006.338,3101.105,5439.542,1583.756,1182.948,1679.262,24091.857,4610.808,1754.574,399510.38,625.402,4228.34,243603.55,259094.4,9272.797,1019.718,20473.61,54143.152,7454.493,3294.255,4803.922,1737.062,5094.591,2110.181,610.279,4451.428 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_400,0.8760,0.7787,0.8606,0.8807,0.8910,0.8995,0.9148,0.8846 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_401,1661775.0,245632.2,253324.17,12374.887,868.05,19458.646,54177.547,7765.752,3018.534,5414.03,1576.0,1329.132,1727.284,23500.191,4616.564,1757.682,405379.75,647.487,4369.263,244626.39,256154.89,9407.847,923.135,19933.918,54496.258,7401.18,3248.597,4752.24,1558.19,5127.865,1998.001,654.319,4554.946 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_401,0.8731,0.7784,0.8570,0.8842,0.8874,0.8963,0.9121,0.8871 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_402,1663325.5,244319.3,258158.69,12874.202,817.584,19166.75,54836.96,7959.702,3006.671,5382.283,1524.592,1215.762,1628.385,23373.562,4688.35,1841.28,398473.97,621.295,4307.282,242942.22,260681.4,9581.724,896.521,20397.11,54924.793,7504.594,3228.354,4874.419,1648.622,5229.115,2056.168,634.157,4529.725 PA000001_BRAIN-CIA_(SEIZURE)_20230331092753_402,0.8719,0.7747,0.8608,0.8802,0.8868,0.8978,0.9100,0.8853 PA000001_ROUTINE_BRAIN_3_20100714170732_3,1603236.5,241893.73,266811.88,10947.267,699.131,19696.7,54283.285,8254.873,3275.736,5514.76,1431.946,961.883,1666.596,22647.115,4773.668,1876.633,335569.56,647.98,4361.797,240639.94,264570.56,8001.126,757.66,19483.543,54699.305,7797.914,3303.598,5111.06,1428.236,5190.896,1965.085,653.034,4320.0 PA000001_ROUTINE_BRAIN_3_20100714170732_3,0.8779,0.7803,0.8432,0.8836,0.8951,0.8893,0.9172,0.8993 SAG_T1_3D.nii,1664057.9,242494.23,259032.12,12892.384,730.414,19415.113,55351.996,8005.294,3015.81,5571.746,1579.841,1214.44,1643.221,23952.111,4865.56,1865.823,396928.75,661.326,4328.766,242171.7,261351.95,9520.804,853.423,20236.508,56332.02,7574.464,3236.209,4914.037,1620.298,5428.688,2121.055,624.305,4523.336 SAG_T1_3D.nii,0.8701,0.7737,0.8594,0.8868,0.8895,0.8974,0.9117,0.8894 SAG_T1_3D,1663402.2,243289.12,258766.73,12888.028,701.452,19232.512,55192.03,8104.718,3037.849,5598.458,1637.105,1202.877,1698.615,24143.703,4923.83,1826.25,396238.84,677.97,4229.972,242086.22,261720.25,9523.27,896.709,19939.232,55804.176,7581.982,3231.227,4907.286,1645.615,5376.435,2179.888,655.168,4464.632 SAG_T1_3D,0.8720,0.7770,0.8604,0.8891,0.8938,0.8978,0.9110,0.8901
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