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FREESURFER_HOME was set to
/autofs/space/locus_001/users/mv1048/LC_HYP/FS6/
(the FS6 folders contains our folders of subjects processed with FreeSurfer)
I am working remotely on a Linux (Centos 7.9.2009) via screen sharing on my Mac
(Intel, OS 10.15.7)
Thank you
Heidi
From: fsbuild <fsbu...@contbay.com>
Date: Sunday, 20 August 2023 at 17:04
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Cc: "Jacobs, Heidi I.,PHD" <hjac...@mgh.harvard.edu>
Subject: Re: [Freesurfer] ScLimbic issue
External Email - Use Caution
Please let us know what FREESURFER_HOME is set to, and what (Linux or Mac)
operating system your machine is running. If you are on a Mac please indicate
if it is one of the current silicon Macs (M1, M2, chip) or one of the older
Intel Macs.
- R.
On Aug 20, 2023, at 14:57, Jacobs, Heidi I.,PHD <hjac...@mgh.harvard.edu> wrote:
External Email - Use Caution
Hello FreeSurfer team,
I am trying to run the sclimbic tool on our FreeSurfer processed images (from
the Martinos center).
For some unknown reason I keep getting the same problem:
Excluding seg [853]
Using CPU
Illegal instruction (core dumped)
Not sure what this means?
I have sourced /usr/local/freesurfer/nmr-dev-env and set the SUBJECTS_DIR
correctly.
I tried with the - - s option referring to the FreeSurfer processed subject as
well as the - - i option, referring to the orig.mgz image.
Using the nifti image or the mgz image doesn’t make a difference either.
Any suggestions on what the problem may be or how to resolve this?
Thank you
All the best
Heidi
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