External Email - Use Caution I’m not sure if I understood what you are trying to show. If you want to show the cortical thickness on top of the pial surface, you can load it as an overlay.
Ruopeng On Jun 14, 2023, at 7:30 AM, Malav Shah <malav.s...@bccn-berlin.de<mailto:malav.s...@bccn-berlin.de>> wrote: External Email - Use Caution Dear freeesurfer team, Thank you for your support. I have cortical thickness measurements. I want to know if I can visualise it on top of the pial matter surface. I guess my mail missed the thread conversation, so asking as a new issue. At the moment, I can see only white matter surface in its appropriate form. Pial surface looks more like a blanket on top of the grey matter, rather than bedsheet as it should ideally look. I understand that's the issue because Iextract pial matter with mri_tesselate command from tissue segmentation (white-, pial- and grey-matter labels). I think I am looking for pial matter surface that the command 'mris_place_surface' generates in traditional recon-all pipeline, and want to measure its curvature and surface area). Can you please suggest how can use that command, or some other alternate to see pial mattter on top of the cortex? Thank you in advance. - malav <pial_matter_blancket.png> Malav Shah PhD candidate, Michael Brecht Lab, Humboldt University zu Berlin. (+49) 163-216-9391 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://secure-web.cisco.com/1xdvXvMrbs3N3T72RYc3n-Ma3C73w1SGC20c_4F1Ki666tkQM9d9NWChI0jhXLW4PkDMTlLKr5TWOtTINVc3N3-mqcWjc0s73jJFbKdEK5HGKDFkLrUyESIUDAjTlcO06BHE47mICQhcxbJYmD7IDqI_e0o16QzlNZ-KAEy0fphRknXOcAZvsBfThzBCBnZ7C7t0pMAtzLiA_PdlQ9bTBCCzzKHIyhtyWfM2qqWb5U3Z0W-l_jaZ7xDsn-BJ3Tc94u7La_tQ9nmbirJPNwXa7Nw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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